Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1502 132 4e-26 >seq1502 Length=19671 Score = 132 bits (146), Expect = 4e-26 Identities = 562/881 (64%), Gaps = 19/881 (2%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 ||||| |||| || || |||| |||| |||||||| ||||| ||||| |||| | Sbjct 5905 ACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTGAAGA 5846 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 || || ||||| ||| ||| ||||| ||| | | |||| || || | Sbjct 5845 GATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCCTAAA 5786 Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427 | | | ||||| ||||| |||||||| || || || ||| | | | || ||| Sbjct 5785 CATTCTAACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAATCTTGAATTCATT 5726 Query 4428 CCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 || || || ||||| |||| | | | ||| | |||||| ||| ||||| Sbjct 5725 CCTATCAAG-TCACAAGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTGCTTC 5667 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA 4546 | | | |||| | | | |||| | | ||||||| | | | | | | ||| Sbjct 5666 TTTTACAATATTCTGAACAATTTCTTCTGGTAATTTATTTTCCAGCAGACTATATATTAA 5607 Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| ||| || ||| || ||||| ||||| ||||| | ||| ||| ||| |||| Sbjct 5606 ACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAAGTTAG 5547 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || | | | | | ||||||| ||| || ||||| ||| ||| ||| || Sbjct 5546 CCCATGTAATTTATTTTGTTTTTTAAACCAGAAAATAGCACAAAAACTACCACTAAACAA 5487 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 ||| |||||||| ||| ||||||| || | || || ||| || | | Sbjct 5486 TATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGAATTGGTATTAT---T 5430 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 ||||||||| ||||| |||||| || ||||| || || | | ||| |||| Sbjct 5429 AATCCATTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTCTATTGCGTG 5370 Query 4787 AAATAA-TTTACTT-----TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 |||||| |||| | |||||| || | |||||| | || || | | || Sbjct 5369 AAATAAATTTAATCGCTCCTTTTCA------TCCTTTATATAATTATCAATCAACAAACT 5316 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 || |||| ||||| ||||| || | || || ||||| ||||| ||||||| Sbjct 5315 GTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCTTAGCTTC 5256 Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCGTCAC 4959 |||| ||||||||| | ||||| || ||| | || ||||| ||||| || |||| Sbjct 5255 CGTTATTTGAACTTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAAAACTATTCCATCAC 5197 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTT 5019 | ||||||||||| || || ||||| |||||| | | ||| | || | ||||| Sbjct 5196 TTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTAATTTTT 5137 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 | | |||||| | | |||||| | ||||| | |||||||| || ||||| | Sbjct 5136 CAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAGCTTCTG 5077 Query 5080 CTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGA 5120 ||||||| || | ||| | || |||||| ||| ||| Sbjct 5076 CTTTTTTATAAAAGTCCCATACGTCTGGATACAAAATTGGA 5036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427011762070910