Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1378 450 2e-121 seq1502 168 9e-37 >seq1378 Length=4202 Score = 450 bits (498), Expect = 2e-121 Identities = 1143/1708 (67%), Gaps = 58/1708 (3%) Strand=Plus/Minus Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 || ||||| ||| |||| | ||| || ||||| | |||||| ||||||| |||||| Sbjct 2321 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 2262 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTATTTTGAA-TGGA-AC 77040 || | |||||| | | || || | ||||| || | ||| || | | |||| || Sbjct 2261 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTA--TTTCACTTATATACTGGACAC 2204 Query 77041 CACCATC-TG---ATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTT 77096 |||| || | ||| || | || ||||| || | ||| || ||| || | Sbjct 2203 TTCCATTATGCGCAATTAACTGCTGT-TTCATATCTTCGTCCCATAAGCCCCTATCGAAT 2145 Query 77097 AAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTG 77156 | | || | | | |||||| ||||| | |||||||||| ||| ||||| | | Sbjct 2144 AGATCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAA 2085 Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 ||||| ||||| ||||| ||||| | ||||| || || || | ||||||| |||||| Sbjct 2084 TAAATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAA 2025 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 77276 ||||||||||||||||| | | |||| ||| || | ||||||| | | ||||| Sbjct 2024 GCAGTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGC 1965 Query 77277 TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAAC-----ATCCCAAAGATCGTATT 77331 ||||| | | ||||| ||| | || | | | | || ||| | ||| ||| Sbjct 1964 TTTAGTTCATCCCAATTCCA--GTACTTACTATCTACCTTTTTATTCCACATATCAAATT 1907 Query 77332 GTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCA- 77390 ||||||| || | |||||| || | ||| | |||||||||||| | | ||| Sbjct 1906 GTAGAATACCTTGACTAGCTGGACTACCCTGATAAGATTCATAAGGTCCAT--GAATCAT 1849 Query 77391 -GCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAAT-CTTCTTAT 77448 |||| ||| | | ||| || || | || || || |||||||| || ||||| || Sbjct 1848 TGCTAATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCT-AT 1790 Query 77449 TGAGATCTTGTGCTTCAATACTA-TCAAACGGATAATGTAAAAGAATAAAGGCATCTGCT 77507 | | |||| |||||| | | | ||| | ||||| ||||| ||||| | ||||||| Sbjct 1789 TCAACTCTTTAGCTTCA-TCCGACTCATAGGGATATCTCAAAAGCATAAAAGTATCTGCT 1731 Query 77508 AATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGA 77567 || |||||||| || ||||| ||||||||||| ||||| || || | ||| |||||| | Sbjct 1730 AACCCCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTTA 1671 Query 77568 ATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACG 77627 ||||| |||||||| | || || ||||||| ||||||||| || | ||| | Sbjct 1670 ATAGGGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAATT 1611 Query 77628 TCCTTTAGTTTAAGAAAATCAAA-TCTTCCATCTATA-----ACAAACATGTTCAAAGCT 77681 || | || ||| ||||| ||| |||| | | | ||||| || ||||| Sbjct 1610 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCCAAGTCCACAAATTTGCATAAAGCA 1551 Query 77682 ATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTA 77741 ||||| || |||||||| || || || |||| || | ||| | || || || | Sbjct 1550 ATAGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCACAA 1491 Query 77742 CATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAG 77801 || | |||||||||||||||||| || ||||||| ||| || || ||| |||||| Sbjct 1490 CACAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATGAG 1431 Query 77802 TCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAG 77861 || ||||| | ||| | ||| || |||||||| || || | |||| ||| Sbjct 1430 TCTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACCAT 1371 Query 77862 ACGACTCTAGCTTTTATCATAGATTTGTATCGCC-----TCTCTCTTTCATATTGAGTAT 77916 | | ||| | | | ||| | || | | ||| | ||| |||||| | | || Sbjct 1370 A--AATCT---TGTGCTAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACAT 1316 Query 77917 ATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACA 77976 ||| ||||||||| || ||||| ||| | ||| |||||||||||||| |||| Sbjct 1315 ATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACA 1256 Query 77977 TCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAG 78036 | || | ||| | || ||| || |||| |||||| || | ||||| | ||| | || Sbjct 1255 TTAAAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAG 1196 Query 78037 CAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAA 78096 || ||| | ||||| | ||| |||||| || || ||| ||| | | ||| | || Sbjct 1195 CATAAAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAA 1136 Query 78097 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTAT 78156 | || | ||||| |||||||||||||| | ||| | || | | || || ||| Sbjct 1135 ATTCGAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTC 1076 Query 78157 TACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 78216 ||||| ||||||| |||||| || || | |||| ||||||| ||||| || | | | Sbjct 1075 CTCCTCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTC 1016 Query 78217 CGTTAGATGTTCCATTTGTTCCAGAAATATA--ACTTCCACTTG--CGCGAATAT-TACT 78271 | || || ||||||| || || |||||| | || ||| | | |||| | | Sbjct 1015 CATTTGAAATTCCATTCGTACCTCTAATATACGAATT----TTGTCCTCTTATATCTTGT 960 Query 78272 AATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATC 78331 | | | || ||||| || || || | ||| || ||||| || |||| | ||| || Sbjct 959 ACT-GCTACACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTC 901 Query 78332 GTAGATACCCTCTAT--ACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTG 78388 | | ||||| ||||| | | | || |||| | ||| ||||||||| |||||||| Sbjct 900 GAATATACCTTCTATTGAATCTGAT--TTCATAGATAA-AAGAAAACAAGACGACATTTG 844 Query 78389 ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA 78448 | | ||| || | |||||||||||| || | ||||| || || |||||| ||| Sbjct 843 GGGTCTAGGAGTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGA 784 Query 78449 AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTA 78507 | | || || ||||| | ||| ||||| || || | ||| || |||| || || Sbjct 783 CATCAAATGATAAGTTTCTAATGCTTTATCTATATCATCAAT-ATGTATACCTATCGATA 725 Query 78508 CACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATG 78567 | | ||| || | ||| || |||||||||| | || || || || || || || | Sbjct 724 CTCTCATTAATAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAG 665 Query 78568 ATTTTTCCAAAGTTTTAAAACCAAAATA 78595 || |||| || || ||||| |||||||| Sbjct 664 ATCTTTCTAATGTCTTAAATCCAAAATA 637 >seq1502 Length=19671 Score = 168 bits (186), Expect = 9e-37 Identities = 383/567 (68%), Gaps = 22/567 (4%) Strand=Plus/Minus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 |||||||| ||| || ||| | ||||||||||||||||||||||| ||| ||| Sbjct 5611 ATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAA 5552 Query 48195 GTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 || || || | | ||| | ||||||| | ||| || || || ||| ||| Sbjct 5551 GTTAGCCCATGTAATTTATTTT--GTTTTTTAAACCAGAAAATAGCACAAAAACTACCAC 5494 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC---TCCGTAACTGGCTT 48309 ||| ||||| |||||||| ||| ||| || || || || | || | || Sbjct 5493 TAAACAATATACCTTCTACACATGCATTTGC--TA---CTATCCGTTCTGCAAAAGAATT 5439 Query 48310 CGTTGTGT--ATCCACCGTTGT--GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365 || | | ||||| ||| ||||| ||| || || || ||| || || || Sbjct 5438 GGTATTATTAATCCAT--TTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTT 5381 Query 48366 TCTATAGCATTAAAGAGAAAGtttttt--tCATTGCTATCTTTAACGTAAGTATCTATTA 48423 ||||| || | ||| | || || | || || ||| || | ||| |||| || | Sbjct 5380 TCTATTGCGTGAAATA--AATTTAATCGCTCCTTTTCATCCTTTATATAATTATCAATCA 5323 Query 48424 AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATC 48483 | | ||| || |||| || |||||||| || | ||| || ||||| ||||| Sbjct 5322 ACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAATTTCT 5263 Query 48484 TCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTC 48543 | ||||| || || || || || | ||||| ||||||||| || ||||||| Sbjct 5262 TAGCTTCCGTTATTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTATTC 5203 Query 48544 CATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA 48603 ||||||| || |||||||||||||| |||||||| ||||||| |||||| || | | | Sbjct 5202 CATCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCATTTA 5143 Query 48604 GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATG 48663 ||| | | || || | ||| |||||| ||||| ||||| |||||||||||||| | Sbjct 5142 ATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATGAAG 5083 Query 48664 CCTCTGCTTTTTTATACATATTCCATA 48690 | |||||||||||||| | | ||||| Sbjct 5082 CTTCTGCTTTTTTATAAAAGTCCCATA 5056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694605671972800