Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1378 383 2e-101 seq1502 192 8e-44 >seq1378 Length=4202 Score = 383 bits (424), Expect = 2e-101 Identities = 1126/1707 (66%), Gaps = 56/1707 (3%) Strand=Plus/Minus Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 || ||||| ||| |||| | ||| || ||||| | |||||| ||||||| |||||| Sbjct 2321 TGGTCGATAAAAACTCCCCGATCGGCAGCCATGTCGATAATGTTCTTTTGTTTGATTTCC 2262 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAT---TTGTATTTTGAATGGAT 75634 || | |||||| | | || || | ||||| || | | || ||| || | | Sbjct 2261 CAGACTGTTTTGTAGAGTTCCTTCAAATCATTGGGTATTTCACTTATATACTGGACACTT 2202 Query 75635 CCGCCATCAGATAT-AATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 || || | || || || | || || || || | ||| || || ||| || Sbjct 2201 CCATTATGCGCAATTAACTGCTGT-TTCATATCTTCGTCCCATAAGCCCCTATCGAATAG 2143 Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | || | | | |||||| ||||| | |||||||||| ||| ||||||| | || Sbjct 2142 ATCTTTTAACAAATGAGGGTTAACGACAAAAAATTCTCCACTCAAAACTCTTCTATAATA 2083 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 ||| ||||| ||||| ||||| | ||||| || || || | ||||||| || ||||| Sbjct 2082 AATGTTACTAGTATAAGGTTCAAAGGATTCGTTATTCCCAAGTATTTGAGATGTAGAAGC 2023 Query 75814 AGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 75873 ||| ||||||||||| | | |||| ||| || | ||||||| | | ||||| || Sbjct 2022 AGTTGGCATAGGTGCAAGTAGTAAAGAATTCCTTAAACCATGTTTACGTATTTTGAGCTT 1963 Query 75874 TAGATATTTCCAATCCCAAAGATCTGATGGTACAAC-----ATCCCAGAGATCGTATTGT 75928 ||| | | ||||| ||| | || | | | | || ||| | ||| ||||| Sbjct 1962 TAGTTCATCCCAATTCCA--GTACTTACTATCTACCTTTTTATTCCACATATCAAATTGT 1905 Query 75929 AGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTT--TCA- 75985 ||||| || | ||||| || | ||| | ||| |||| |||| | ||| Sbjct 1904 AGAATACCTTGACTAGCTGGACTACCCTGATAAGATTCATAAG----GTCCATGAATCAT 1849 Query 75986 -GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTAT 76043 |||| ||| | | ||||| ||| | || || || |||||||| || ||||| || Sbjct 1848 TGCTAATTCCATAGACATTTCTAAAGCAGCATAGTACATGGTTTCGAATATTCTTCT-AT 1790 Query 76044 TAAGATCTTGCGCTTCAA--GACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGC 76101 | | |||| |||||| |||| || | ||||| ||||| ||||| | |||||| Sbjct 1789 TCAACTCTTTAGCTTCATCCGACT--CATAGGGATATCTCAAAAGCATAAAAGTATCTGC 1732 Query 76102 TAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGG 76161 || |||||||| || ||||| ||||||||||| ||||| || || | || |||||| Sbjct 1731 TAACCCCTGAACACCTATACCTATAGGTCTATGCCTCTTGTTAGACACTTTGGCTTCTTT 1672 Query 76162 AATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCAC 76221 ||||||||||||||| | || || ||||||| |||||||| || | ||| | Sbjct 1671 AATAGGGTAATAATTTCTTTCAATTATTTTATCTAGATTTCTAGTAATAATTTTTGTAAT 1612 Query 76222 GTCCTTTAGTTTGAGAAAATCAAA-------TTTTCCATCTATCACAAACATATTAAGAG 76274 || | || ||| ||||| ||| ||||||| | |||||| | | || Sbjct 1611 TTCATATAATTTTTTAAAATTAAATTCTTTTTTTTCCAAGT-CCACAAATTTGCATAAAG 1553 Query 76275 CTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCG 76334 | ||||| || |||||||| || || || |||| || | ||| | || || || Sbjct 1552 CAATAGAAGCAAGATTACATACAGCAACTTCATCAGGTGAAGTATACTCAATAATTTCAC 1493 Query 76335 TGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG 76394 || | ||||||||| |||||||| || ||||||| ||| || || ||||||| Sbjct 1492 AACACAAATTACTACATTTGATAGTACCTAGATTTTTTTGATTCGATTTAGCATTACATG 1433 Query 76395 AGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCC 76454 |||| ||||| | | | | ||| || |||||||| || || | |||| || Sbjct 1432 AGTCTTTATATAACATATATGGAACACCTGTTTCAATTTGACTTTGTAATATAGCAAACC 1373 Query 76455 AGACGACTCTAGCTTTTATTATAGATTTGTATCGC---TTCTCTCTTTCATATTGTGTAT 76511 | | | ||| | | || || || ||| | | | || ||| |||||| | || Sbjct 1372 ATA--AATCTTG-TGCTAATACAGTTTTTTTGCCCATATTTTCTTCTTCATACTTAACAT 1316 Query 76512 ATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACA 76571 |||| ||||||||| || ||||| ||| | || || |||||||| ||||||| Sbjct 1315 ATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAGTCCTGGGCATTCATTTGGACACA 1256 Query 76572 TCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAG 76631 | || | ||| | || ||| || || | |||||| || | ||||| | ||| | || Sbjct 1255 TTAAAGTCCAATTTTGATTTTCTTTTACTCTTTTCATGAACAAGTCAGGAACCCAAACAG 1196 Query 76632 CAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGA 76691 || ||| | ||||| | ||| |||||| || || ||| ||| | | ||||| | Sbjct 1195 CATAAAACAAATCTCTTGCTCTTAATTCTTCTTTGCCATGATTTTTTCTTAAATCTAAAA 1136 Query 76692 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTAT 76751 | || | ||||| |||||||||||||| | ||| | || | | ||| || ||| Sbjct 1135 ATTCGAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGAACCTTTTCTTTTTC 1076 Query 76752 TACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGC 76811 ||||| ||||||| |||||| || || | |||| ||||||| ||||| || | | | Sbjct 1075 CTCCTCCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATAGGTACGAGTC 1016 Query 76812 CGTTAGATGTACCATTTGTTCCAGAAATATA--ACTTCCACATGCACGAATAT-TACTAA 76868 | || || | ||||| || || |||||| | || | | | |||| | || Sbjct 1015 CATTTGAAATTCCATTCGTACCTCTAATATACGAATT--TTGTCCTCTTATATCTTGTAC 958 Query 76869 TAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCAT 76928 | | || ||||| || || || ||||| || |||||||| |||| | ||| || Sbjct 957 T-GCTACACCTATACCACCAGCTGTTTTACTAATAAGAGCACACTGTTTTAGTGTTTCGA 899 Query 76929 AGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGA 76987 | || || ||||| ||| |||| | ||| ||||||||| |||||||| | Sbjct 898 ATATACCTTCTATTGAATCTGATTTCATAGATAA-AAGAAAACAAGACGACATTTGGGGT 840 Query 76988 TGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGT 77047 | ||| || | |||||| ||||| || | ||||||||||| |||||| ||| | Sbjct 839 CTAGGAGTACCAGAATTAAATAATGTTGGTGTAGCATGAGTGAAATATTTTTGAGACATC 780 Query 77048 AGATTGTATGTTTCAATAACTGCT---TCTATATC-CCATTGATGAATTCCTACAGCGAC 77103 | || || ||||| ||| |||| |||||||| || | ||| || |||| | || Sbjct 779 AAATGATAAGTTTC--TAA-TGCTTTATCTATATCATCAAT-ATGTATACCTATCGATAC 724 Query 77104 ACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGA 77163 | ||| || | ||| || |||| ||| | | | || || || || || || || || Sbjct 723 TCTCATTAATAAATGTTGTGGTCTTTCAATAATTTTGTTGTTAATACGTAATAAATAAGA 664 Query 77164 TTTTTCCAAAGTTTTAAAACCAAAATA 77190 | |||| || || ||||| |||||||| Sbjct 663 TCTTTCTAATGTCTTAAATCCAAAATA 637 >seq1502 Length=19671 Score = 192 bits (212), Expect = 8e-44 Identities = 391/570 (69%), Gaps = 28/570 (5%) Strand=Plus/Minus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 |||||||| ||| || ||| | ||||||||||||||||||||||| ||| ||| Sbjct 5611 ATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTACTAAAA 5552 Query 46684 GTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 || |||||| | | ||| | | ||||| | ||| || ||||| ||| ||| Sbjct 5551 GTTAGCCCATGTAATTTATT--TTGTTTTTTAAACCAGAAAATAGCACAAAAACTACCAC 5494 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC---GTAACTGGCAT 46798 ||| ||||| ||||||||| || ||| || | | ||| | || ||| Sbjct 5493 TAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGAATTGG--- 5437 Query 46799 CATTATGAATCCACCTTTG--AGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTC 46856 ||||| |||||| |||| |||||| ||| || || || ||| || || |||| Sbjct 5436 TATTATTAATCCA--TTTGGCAGCCCACAAAGCTTTATTTTTAACAGCTGGTATATTTTC 5379 Query 46857 TATAGCATTAAAGAGA---AA---GtttttttCATCACTATCTTTAACATATGTATCTAT 46910 ||| || | ||| | | || | |||||||| |||| | ||| |||| || Sbjct 5378 TATTGCGTGAAATAAATTTAATCGCTCCTTTTCATC-----CTTT-ATATAATTATCAAT 5325 Query 46911 TAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACA 46970 || | ||| || ||||||||||||| || || | || || ||||| | |||| Sbjct 5324 CAACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAAT-AAAATT 5266 Query 46971 TCTT-GCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTA 47029 |||| ||||| || || || || ||| | ||||| || |||||| || |||| Sbjct 5265 TCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACTA 5206 Query 47030 TTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAG 47089 |||||||||| || ||||||||||| || |||||||| ||||||| |||||||| | Sbjct 5205 TTCCATCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTTCAT 5146 Query 47090 TCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATG 47149 | | ||| | | || || | ||| |||||| ||||| ||||| |||||||| |||| Sbjct 5145 TTAATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAAATG 5086 Query 47150 ACGCCTCTGCTTTTTTATACATATTCCATA 47179 | || |||||||||||||| | | ||||| Sbjct 5085 AAGCTTCTGCTTTTTTATAAAAGTCCCATA 5056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712869612086400