Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq5650 197 1e-45 seq1502 168 7e-37 seq4973 104 2e-17 seq7260 87.8 2e-12 >seq5650 Length=2433 Score = 197 bits (218), Expect = 1e-45 Identities = 206/267 (77%), Gaps = 5/267 (2%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||| ||||| | |||||||||||||||||| ||| | | ||| |||| | |||| Sbjct 44 TCTCAATCTGTCATCTAGGCTGGAGTGCAGTGGCATGAACACAGCTTACTGTAGCCTCAA 103 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 |||||| || ||||| || |||| |||||||||| |||||||||||| |||||| Sbjct 104 CCTCCCAGGCTCAAGTGATCCTCCCACCTCAGCCTCTTGAGTAGCTGGGACTACAGGTGT 163 Query 8464 AAGC--CACCACGCCAAGCTAATT--TTTGTATT-TTTAGTAGAGAGAGGGTTTCACCAT 8518 || ||||| | | ||| || ||||| || ||| ||||||| ||| |||| || Sbjct 164 GTGCACCACCATGACTGGCTTTTTGTTTTGTTTTGTTTTGTAGAGATGAGGTCTCACTAT 223 Query 8519 GTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAA 8578 |||| ||||||| | | |||||||||| || | ||||||| | ||||| ||||||||| Sbjct 224 GTTGCCCAGGCTAGAATTGAACTCCTGAGCTTAAGTGATCCTCTGGCCTCAGCCTCCCAA 283 Query 8579 AGTGCTGGGATTACAGGCATGAGCCAC 8605 ||||||||||||||||| |||||||| Sbjct 284 AGTGCTGGGATTACAGGACTGAGCCAC 310 >seq1502 Length=19671 Score = 168 bits (186), Expect = 7e-37 Identities = 554/841 (66%), Gaps = 35/841 (4%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||| |||||| ||| ||||| || |||| | | |||||||||||||||| || || | Sbjct 5909 CATTACACCCGATTTCTGATAATCGGCAACTCTTTTTTCGAAAAAATTTGTTTTTCCTTG 5850 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 | ||||| ||||| ||| ||| ||||| | || | | || | ||| Sbjct 5849 AAGAGATATCAAATCCATCCAATTAAAAGGATTTTTTGAATAAAAGACTTTTGAGCATCC 5790 Query 23325 TAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCAT-AGT 23383 ||| | ||| | ||||| || ||||||||||| ||||| |||| || || | | | Sbjct 5789 TAAACATTCTAACAATCTATCAGCCACAAATTCAATGTATTGTGACATTAA-TCTTGAAT 5731 Query 23384 TTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAG 23443 | || ||||| | | || | | ||| ||| ||| | ||| | || | Sbjct 5730 TCATTCCTATCAAGTCACAAGGTAAAGATTCACATATAAATGATCGTTCTACTTCTACTG 5671 Query 23444 CATCTTTAAT--TATT-TGAACAATAACTTCTTCACTAGGTGGATATTTTAAAT---ACT 23497 | ||||| | |||| |||||||| ||||| || | |||||| | ||| Sbjct 5670 CTTCTTTTACAATATTCTGAACAATTTCTTCTGG--TAATT---TATTTTCCAGCAGACT 5616 Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 | | | |||||| ||| || ||||| |||||||| |||||||| ||||||||| Sbjct 5615 -ATATATTAAACAGTTAAAGTCTGTATGTAATCCTTCATCTCTACTAATTAATTCATTAC 5557 Query 23558 AAAATGTTAATCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT 23616 ||| |||| || || ||| || | ||||||||| ||| || || ||| ||| Sbjct 5556 TAAAAGTTAGCCCATGTAATTTATTTT-GTTTTTTAAACCAGAAAATAGCACAAAAACTA 5498 Query 23617 CCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCA 23676 || ||| || ||||| || ||| ||| || || | ||| |||| | | Sbjct 5497 CCACTAAACAATATACCTTCTACACATGCATTTGCTACTATCCGTTCTGCAAAAGA---A 5441 Query 23677 TTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACA-CTCA-ATTG 23734 || || | ||||||||| | ||| ||| || ||||| ||| || || Sbjct 5440 TTGGTATTATTAATCCATTTGGCAGCCCACAAAGCTTT--ATTTTTAACAGCTGGTATAT 5383 Query 23735 TTTCAATTGCTTTTAAGAGAAAAGTTTTTTCT-TCATT---ATCTGTTATATATGTATCA 23790 |||| ||||| | || | || ||| || || || ||| ||||||| ||||| Sbjct 5382 TTTCTATTGCGT----GAAATAAATTTAATCGCTCCTTTTCATCCTTTATATAATTATCA 5327 Query 23791 ATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAA 23850 || | ||||| || |||| ||||||||||| || | || || ||||| |||||| Sbjct 5326 ATCAACAAACTGTAAGTTTCTGAATGAATATTCTCCACTGCTATTTGAAAAGAATAAAAT 5267 Query 23851 CATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACA 23910 ||||||| | | |||||| || | |||||| | |||| |||||||| ||| Sbjct 5266 TTCTTAGCTTCCGTTATTTGAACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAAAACT 5207 Query 23911 ATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTT 23970 || |||||||| || ||||| || || | |||| ||||||||||||| |||||| || Sbjct 5206 ATTCCATCACTTGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCAT--TTT 5149 Query 23971 GA--TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAA 24028 | |||||||| |||| || | ||| |||||||||| | || || ||||||||| Sbjct 5148 CATTTAATTTTTCAAAATCTTTCAAATCGCTTGATAAATCTATCTCTTCTGCTGTCCAAA 5089 Query 24029 A 24029 | Sbjct 5088 A 5088 >seq4973 Length=3488 Score = 104 bits (114), Expect = 2e-17 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | Sbjct 3417 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTG 3476 Query 8404 CCTCC 8408 ||||| Sbjct 3477 CCTCC 3481 >seq7260 Length=4452 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 8466 GCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCC 8525 ||||||| || |||||||||||||| || |||||||| ||||| ||||||||| | Sbjct 4366 GCCACCATACCCTGCTAATTTTTGTATGTT-AGTAGAGATGGGGTTCTTCCATGTTGGTC 4424 Query 8526 AGGCTGGTCTCGAACTCCTGACCTC 8550 ||||||||||| || |||||||||| Sbjct 4425 AGGCTGGTCTCAAAATCCTGACCTC 4449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521440609778000