Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1322 141 1e-28 >seq1322 Length=3124 Score = 141 bits (156), Expect = 1e-28 Identities = 585/903 (65%), Gaps = 25/903 (3%) Strand=Plus/Minus Query 16663 AACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAG 16722 |||||| | | || ||||| ||| |||||||| |||||||| ||||| || | ||| Sbjct 2945 AACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAG 2886 Query 16723 AGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAG 16782 ||| || ||||| ||| ||||||||| | || |||| ||||| || | || | Sbjct 2885 AGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACCTAA 2826 Query 16783 TTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCAT 16842 | | ||||| ||| ||||||||||||||||| || |||||||| | ||||| Sbjct 2825 ACATTCCAATAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAATTCAT 2766 Query 16843 TCCTATAAGACGTACCGGAAGAGCTTC---CGTCAAAAATCGTTGCTCTATAACAACCGC 16899 || || | | || |||| ||| | ||| ||| | || | |||| || Sbjct 2765 CCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTT---TCAACTTCAACAGC 2709 Query 16900 TTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTT-TAAGATGTTTAAACA 16958 ||| |||| |||| | ||| ||| || | | ||| || ||| | || | | Sbjct 2708 TTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATA-AACTATATA 2650 Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 | | ||| ||||| ||||||||| || ||||| || || ||||| ||| ||| | Sbjct 2649 TTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAG 2590 Query 17019 TCA-ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 | | || | || | | || |||| || |||||||| || || || ||| | Sbjct 2589 TAAGTCCATGTAATTTATTCT-GTTTTTTAAACCAAAAAATTGCACAAAAACTACCACTA 2531 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 || | |||||| || || ||||| || | | || ||| || | | | | | Sbjct 2530 AATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA---TGAATTTGTA 2474 Query 17138 TTACGAATCCATTTCTGCA-CCCACTCGGCTTTTTGCTTTA-TGCAATCCATCGTTTCTA 17195 | | |||||||| |||| |||| ||||| | ||| | ||| || |||| | Sbjct 2473 TCATTTATCCATTT-TGCAGCCCAAAGTGCTTTATTCTTAACTGC-TGGTATATTTTCAA 2416 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 | || | |||||| || ||| | || ||||||| |||| || |||| | Sbjct 2415 TAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAAGTAAAC 2356 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||| |||| || |||||||| || | ||||| |||||| |||||| | |||| Sbjct 2355 TGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCTT 2296 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTC-CGCTAGATTTTCGTTCACGATGCCGTCG 17374 | | |||||||||| | | || || | | | || | |||||| || || || || Sbjct 2295 CTGTAATTTGAACTT-CTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCA 2237 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTC-GTCCGGTGTAAGAAC 17433 || || || ||||| || || | ||| ||||| |||| |||||| | | ||| Sbjct 2236 CTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTT 2177 Query 17434 GCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCAC 17493 | | || |||||||| | |||| ||| | |||||| | |||||||| || | Sbjct 2176 TC-AAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTC 2118 Query 17494 TGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAA--CATATCTA 17551 ||| |||||||| | || ||||| ||| |||| || || |||||| | ||||| Sbjct 2117 TGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGG--ATACAATGTAAATCTA 2060 Query 17552 TCT 17554 ||| Sbjct 2059 TCT 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517519560987000