Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1322 179 4e-40 >seq1322 Length=3124 Score = 179 bits (198), Expect = 4e-40 Identities = 595/906 (66%), Gaps = 31/906 (3%) Strand=Plus/Minus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 |||||| | | || |||||| ||| |||||||| || ||||| |||||||| | || Sbjct 2945 AACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAG 2886 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020 ||| || ||||| ||| ||| ||||| | || |||| || || || | || | Sbjct 2885 AGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACCTAA 2826 Query 16021 ---TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATT 16077 |||| | ||||| ||||||||||||||||||||| ||| ||||||| |||| Sbjct 2825 ACATTCC---AATAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAATT 2769 Query 16078 AATTCCTAT-AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCG 16136 || || || || || | || |||| || || || | ||| | |||| | Sbjct 2768 CATCCCAATTAAATCACAA-GGTAGAGATTCACATATGAAAGATCTTTCAACTTCAACAG 2710 Query 16137 CTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACA 16196 ||||||||| |||| | | | ||| | | ||| | || || | | Sbjct 2709 CTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAACTATATA 2650 Query 16197 TTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAG 16256 ||| ||| || || ||||| |||||| ||||| || || ||||| || ||||| Sbjct 2649 TTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAG 2590 Query 16257 TTAACCC-TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315 | | || || |||| | || |||| || ||||| || || ||| ||| || | Sbjct 2589 TAAGTCCATGTAATTTATTCT-GTTTTTTAAACCAAAAAATTGCACAAAAACTACCACTA 2531 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 || | |||||| |||||| ||||| || | | || ||| || | | | | | || Sbjct 2530 AATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAA---TTTGTA 2474 Query 16376 TTACGAATCCATTTCTGTA-CCCATTCGGCTTTTTGTTTTATACAATCC----ATCGTTT 16430 | | |||||||| || | |||| ||||| | | ||| | | | || ||| Sbjct 2473 TCATTTATCCATTT-TGCAGCCCAAAGTGCTTTAT-TCTTA---ACTGCTGGTATATTTT 2419 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | || || | ||| || || ||| | | ||| ||||||| ||||||| |||| Sbjct 2418 CAATAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAAGTA 2359 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 |||||||| ||||||| |||||||| |||| ||||| |||||| || || | || Sbjct 2358 AACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAG 2299 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTC-CGCCAGGTTCTCATTCACGATACCG 16609 | || | ||||| |||| | | ||||| | | | |||| || || || ||||| Sbjct 2298 CTTCTGTAATTTGAACTT-CTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCA 2240 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTC-GTCAGATGTAAG 16668 ||||| || |||||||| || || | || ||||| |||| |||||| | || ||| Sbjct 2239 TCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAA- 2181 Query 16669 AATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGC 16728 | | ||||||||||||| | |||| ||| | |||||| | |||||||| || Sbjct 2180 TTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGC 2121 Query 16729 CACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGT--AT 16786 |||| |||||||| | | ||||| ||| |||| || || |||| | || || Sbjct 2120 TTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGG--ATACAATGTAAAT 2063 Query 16787 CTATCT 16792 |||||| Sbjct 2062 CTATCT 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511388669463000