Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq148 95.1 1e-14 seq2752 93.3 3e-14 >seq148 Length=40499 Score = 95.1 bits (104), Expect = 1e-14 Identities = 279/422 (66%), Gaps = 16/422 (4%) Strand=Plus/Minus Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCA 18857 || || ||||| || || || ||||||||||||||||| ||||||| | | | | || | Sbjct 34331 GGTCCAATTTATGGTTTTCAATGGAGACATTTTGGAGCTGAATATACA-AATATGTATGA 34273 Query 18858 -AACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAA 18916 || ||| | ||||||| ||||| || ||| | ||||| || || |||| | Sbjct 34272 TAATTATGATAATAAAGGAATTGATCAACTAAAAAATATTATAAATTTGATAAAAAATGA 34213 Query 18917 CCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGT 18976 ||| ||| || |||| ||| | | | ||||| ||||||| | ||||| Sbjct 34212 ACCATTAAGTAGAAGAATTATTTTGTGTGCATGGAACGTAAAGGATTTGGATAAAATGGC 34153 Query 18977 ACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTG--C 19034 | |||| || ||||| | ||||| || ||||| || | || ||||||| || Sbjct 34152 ATTACCACCTTGTCATATTTTATGCCAATTTTATATTTTCGATGGGAAATTATCATGTAT 34093 Query 19035 CAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATAT 19094 || |||| || |||| | ||| | || ||||| || || ||||| ||||| || Sbjct 34092 CATGTAT--CAACGATCTTGTGATTTAGGGCTTGGTGTTCCCTTCAATATTGCCTCTTAC 34035 Query 19095 GCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGATTTAATTCA 19153 || || | |||||||| | || || | || ||||| |||| | || |||||| Sbjct 34034 TCAATTTTCACCTACATGCTTGCTCAAG-TATGTAACTTACAACCTGCAG----AATTCA 33980 Query 19154 TACA----ATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGC 19209 |||| | || |||| || || || |||||||||||| | ||||| | || | Sbjct 33979 TACACGTTTTAGGAAATGCTCACATATATAACAATCATATAGATAGTCTAAAAATTCAAC 33920 Query 19210 TA 19211 || Sbjct 33919 TA 33918 >seq2752 Length=4442 Score = 93.3 bits (102), Expect = 3e-14 Identities = 285/431 (66%), Gaps = 15/431 (3%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || ||| | ||||| |||||||||||||||||||| || || |||| ||| |||||| Sbjct 3440 GGAGACATCGGCCCGGGCTACGGCTTCCAGTGGAGACACTTCGGCGCGGCATACAAAGAC 3499 Query 18849 TGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTAT--AGATACAA 18906 || || |||| | ||| || |||| |||||| | | ||| || |||| | Sbjct 3500 ATGCACACAGACTACACAGGGCAGGGCGTCGACCAGCTGAAGAATGTGATCCAGATGC-- 3557 Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966 | | ||| || ||| | || || ||| | || | | |||||||| | | Sbjct 3558 TGAGAACGAATCCAACAGATCGTCGCATGCTCATGACTGCCTGGAATCCTGCAGCGCTGG 3617 Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGT-TGCAAACGG--TG 19023 | ||||| || || || |||||| ||| || ||||| ||||| | | | | | Sbjct 3618 ACGAAATGGCGCTGCCGCCTTGTCACTTGTTGTGCCAGTTCTACGTGAACGACCAGAAGG 3677 Query 19024 AATTATCCTGC--CAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAA 19081 | | || ||| || |||| ||| | ||| | ||| | ||||| || || || ||||| Sbjct 3678 AGCTGTCGTGCATCATGTAT--CAGCGGTCGTGCGATGTCGGCCTCGGCGTCCCCTTCAA 3735 Query 19082 CATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGT-TACAGGACTTAAAACCG 19140 ||| ||| ||| | ||| | || ||| || || || || | || || ||||||| Sbjct 3736 CATCGCTTCCTATTCGCTTTTGACGCTCATGGTTGCACACGTCTGCA--ACCTAAAACCT 3793 Query 19141 GA-GATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTA 19199 | || || ||||| |||||| | | ||| | ||| ||| ||| | || |||||| Sbjct 3794 AAGGAGTTCATTCACTTCATGGGGAACACGCATGTCTACACGAACCATGTCGAGGCTTTA 3853 Query 19200 AAAGTGCAGCT 19210 |||| |||||| Sbjct 3854 AAAGAGCAGCT 3864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399484402456125