Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq148 154 1e-32 >seq148 Length=40499 Score = 154 bits (170), Expect = 1e-32 Identities = 328/485 (68%), Gaps = 6/485 (1%) Strand=Plus/Plus Query 101672 TGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATA 101731 || ||||| ||| ||| || |||| ||| |||||||||| ||||| | || || Sbjct 33922 TGAATTTTTAGACTATCTATATGATTGTTATATATGTGAGCATTTCCTAAAACGTGTATG 33981 Query 101732 AACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTA 101791 || ||| |||| || ||| || ||||||| |||| | || |||| || || Sbjct 33982 AATTCTGCAGGTTGTAAGTTACATACTTGAGCAAGCATGTAGGTGAAAATTGAGTAAGAG 34041 Query 101792 GCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAA 101851 ||||| || || || || || | ||| | |||| |||| |||||||| ||| || Sbjct 34042 GCAATATTGAAGGGAACACCAAGCCCTAAATCACAAGATCGTTGATACATGATACATGAT 34101 Query 101852 AGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTA 101911 | || ||||| | | ||||||||| | ||| | ||||||||| || || |||||||| Sbjct 34102 AATTTCCCATCGAAAATATAAAATTGGCATAAAATATGACAAGGTGGTAATGCCATTTTA 34161 Query 101912 GGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971 | || || ||||| ||||||| | || |||||| || | |||| ||||| Sbjct 34162 TCCAAATCCTTTACGTTCCATGCACACAAAATAATTCTTCTA-CTTAATGGTTCATTTTT 34220 Query 101972 -ATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAAC 102030 || || || | | ||||| ||| |||| ||||| | ||||| | || Sbjct 34221 TATCAAATTTATAATATTTTTTAGTTGATCAATTCCTTTATTATCATAATTAT--CATAC 34278 Query 102031 ACCTTT--ATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCT 102088 | ||| |||||| ||||| ||||| ||||| ||||| ||||| | || || | ||| Sbjct 34279 ATATTTGTATATTCAGCTCCAAAATGTCTCCATTGAAAACCATAAATTGGACCTAAATCA 34338 Query 102089 CCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCC 102148 | | ||||| ||| | ||| |||||||||||| ||||| |||||| || ||| Sbjct 34339 TTTACTTCTCTATCAAATAAATTTCTATTATCTAAAAATTCTCTAGTTCCATTTGCTTCC 34398 Query 102149 CAAAT 102153 || || Sbjct 34399 CATAT 34403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361233478935275