Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq700 356 3e-93 seq1322 206 3e-48 >seq700 Length=13977 Score = 356 bits (394), Expect = 3e-93 Identities = 1029/1573 (65%), Gaps = 35/1573 (2%) Strand=Plus/Plus Query 53127 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 53186 || |||| | ||| ||||| || || ||||||||| | |||||| | | ||||| Sbjct 4034 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4093 Query 53187 TATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 53246 |||| || || |||||||| | ||| ||||| ||||| || || || | ||| ||||||| Sbjct 4094 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4153 Query 53247 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 53306 | ||||||||||| | | ||| |||||| | || | | || | ||||| ||||| | Sbjct 4154 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4213 Query 53307 GAGGTTC---CCAATTCCAAAG------ATCCGACGGTACAACNNNNNNNNNNNNNNNTT 53357 | ||| |||||||||| ||| | || | || Sbjct 4214 G---TTCAGTCCAATTCCAATATTTATTATCAACCTTTATA---TTCCACATATCAAATT 4267 Query 53358 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 53416 | |||||||| | || || | || | ||| |||| | || ||| || | | | | Sbjct 4268 GAAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTGA 4326 Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 53476 |||| ||| | | ||||||||| | ||||| || ||||| || || | |||||| Sbjct 4327 GCTAATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTT 4386 Query 53477 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 53536 | |||| |||||| || | ||||| |||| || ||||| | || |||||| Sbjct 4387 AATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAAT 4446 Query 53537 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 53596 ||||| |||||||| || || ||||||||||| | || || ||||||||||| || | Sbjct 4447 CCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACA 4506 Query 53597 GGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCC 53656 ||||||||||| | ||||||||||| | | ||||| ||| | ||| | || Sbjct 4507 GGATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCA 4566 Query 53657 TTCAGTTTGAGAAAATCAAA-----TTGTCCATCTAT-TACAAACATGTTCAATGCAATA 53710 | | ||| ||||| ||| || | | ||| |||||| | || |||||| Sbjct 4567 TATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATA 4626 Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 53770 ||||| | |||||||| || || |||| | | ||||| ||||| ||| || Sbjct 4627 GATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACAT 4686 Query 53771 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 53830 ||||||||||| || || || |||||||||| ||||||| || ||||| | ||| Sbjct 4687 AGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCT 4746 Query 53831 TTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACG 53890 ||||| | || |||| ||| ||||| || || || || ||| || ||| | Sbjct 4747 TTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAA 4806 Query 53891 ACACGAGCCTTTATTATAGATTTGTATCTC---TTTTCTCTTTCGTATAGTGTATACAAT 53947 | | || || || || ||| | || |||||| ||| ||| | ||| ||| Sbjct 4807 TCTTGCGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAAT 4863 Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 54007 |||||| || || ||||| | || || |||||||||| |||||||| || Sbjct 4864 TTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAAT 4923 Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 | ||| | | | || || |||| ||||||||| | ||| || | ||||| ||| | Sbjct 4924 GTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAA 4983 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 |||| |||||| | || ||| || || || ||| ||| | | ||| || ||| | Sbjct 4984 AATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCA 5043 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATA-TGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | ||||| |||||||| ||||| | |||| || || | ||| | ||| ||| Sbjct 5044 AATATATCTGAATGCCATGGTTCAATATATACTGCAAATGA-TCCTTTTCTTTTTCCTCC 5102 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCAT 54245 || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| || | Sbjct 5103 ACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGT 5161 Query 54246 TGGATGCACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGAT 54304 | ||| |||||| || || ||||| | | | |||| |||| | || | Sbjct 5162 TTGATATACCATTTGTTCCTCTTATATATGAATTTTGTC-CACGTATATCTTGTACTGCT 5220 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || ||||| ||||| || || || ||| | ||||| || ||| | || Sbjct 5221 ACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATT 5280 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 || || || ||| | |||| |||| |||||| ||||| || | | Sbjct 5281 CCTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGT 5340 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || | ||||||||| || || | || || ||||| |||||| || | |||| Sbjct 5341 GTCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGA 5400 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || || | ||| |||| ||| | ||| || || | || || | ||||| | Sbjct 5401 TATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATC 5460 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 | || || |||||||| | || || || || || || || || || |||| || Sbjct 5461 AAATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAAC 5520 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGT 54664 ||||||||||||||||| | || ||| || ||| ||| ||| || || | | Sbjct 5521 GTTTTAAAACCAAAATAATCATAATTAAAATCACGTGTATAATCAATCTCTTTATTTAAT 5580 Query 54665 TTATCCTTATATT 54677 ||||||||| || Sbjct 5581 CTATCCTTATGTT 5593 >seq1322 Length=3124 Score = 206 bits (228), Expect = 3e-48 Identities = 395/575 (69%), Gaps = 8/575 (1%) Strand=Plus/Minus Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA--TTAGGC 24207 |||| || || ||||||||||||| ||| || ||| || ||||| | | ||| | Sbjct 2629 TGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTC 2570 Query 24208 CACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACT 24266 | ||||||| |||||| || | | |||| | ||| ||| | || ||||| || Sbjct 2569 T--GTTTTTTAAACCAAAAAATTG-CACAAAAACTACCACTAAATAGTATACCTTCAACA 2513 Query 24267 GCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCC 24326 ||| || | || ||||||| || | | |||| |||||| ||| |||| Sbjct 2512 CATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGTATCATTTATCCATTTTGCAGCC 2453 Query 24327 CAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttt 24386 ||| || || || || || || || | || ||||||| ||| | || | Sbjct 2452 CAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGT 2393 Query 24387 tCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 24446 || ||| |||||| | ||| ||||||| | | ||| ||| |||| ||||| |||||| Sbjct 2392 TCTTTATCATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTT 2333 Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAA 24506 || | || ||||||||| ||| || | |||| || ||||| || |||||| | || Sbjct 2332 TCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCTTAAA 2273 Query 24507 AATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565 || | | || || |||||||| ||||| || ||||| ||||||||||| || || || Sbjct 2272 AA-CTTACTAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAAC 2214 Query 24566 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 24625 |||||| ||||||| |||||| | | ||| ||| | |||| || | ||| | || Sbjct 2213 ATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTTAAATCACTTGA 2154 Query 24626 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 || ||| | |||||| |||||||||||||||| ||||| |||||||| | || ||| | Sbjct 2153 TAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAAC 2094 Query 24686 GTCATGATATTGAATTGGAAAAATAACAAATCTAT 24720 || | ||| ||||||| | | |||||||| Sbjct 2093 ATCTGGGTATAAAATTGGATACAATGTAAATCTAT 2059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593691728382000