Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq148 170 1e-37 >seq148 Length=40499 Score = 170 bits (188), Expect = 1e-37 Identities = 432/652 (66%), Gaps = 14/652 (2%) Strand=Plus/Plus Query 97050 ATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAAC 97109 ||| || ||||| ||| |||||||||| ||||||| ||| || |||||| |||| Sbjct 33936 ATCTATATGATTGTTATATATGTGAGCATTTCCTAAAACGTGTATGAATTCTGCAGGTTG 33995 Query 97110 TAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGG 97169 ||| | | || || || | ||| | || || | || || ||||| || || || Sbjct 33996 TAAGTTACATACTTGAGCAAGCATGTAGGTGAAAATTGAGTAAGAGGCAATATTGAAGGG 34055 Query 97170 CACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACA 97229 || || || || | |||| |||| |||||| | ||| || | || ||||| | Sbjct 34056 AACACCAAGCCCTAAATCACAAGATCGTTGATACATGATACATGATAATTTCCCATCGAA 34115 Query 97230 CACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGAC 97289 | |||||| || | || | |||||| || || || |||||||| | ||| || Sbjct 34116 AATATAAAATTGGCATAAAATATGACAAGGTGGTAATGCCATTTTATCCAAATCCTTTAC 34175 Query 97290 ATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTAT 97349 ||||| ||||||| | ||||||||| ||| | | | ||| ||| || || Sbjct 34176 GTTCCATGCACACAAAATAATTCTTCTACTTAATGGTTCATTTTTTATCAAATTTATAAT 34235 Query 97350 CTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGC 97409 | |||| |||||||| |||| | ||||||| | | | | | |||||| || Sbjct 34236 ATTTTTTAGTTGATCAATTCCTTTATTATCATAATTATCATACATATTTGTATATTCAGC 34295 Query 97410 TCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACA 97469 ||||||||| |||||||| || ||||||| || || | || | ||||||||||| | Sbjct 34296 TCCAAAATGTCTCCATTGAAAACCATAAATTGGACCTAAATCATTTACTTCTCTATCAAA 34355 Query 97470 GAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACA-CCAG 97528 ||| ||||||||| | |||| ||||||||| ||||| || |||| Sbjct 34356 TAAATTTCTATTATCTAAAAATTCTCTAGTTCCATTTGCTTCCCATATTCTCACATTTTT 34415 Query 97529 ATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAA 97588 || ||| | ||| | | || ||||| |||||||| | |||||||| | || Sbjct 34416 ATTTAACAAAATATTT-CCATTTGTTTCCCCTCTTATAAACCAAAGTAATTCTTCAATAA 34474 Query 97589 CACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAATCCTTTTCTAAGCTGTATC 97648 ||||| ||||| | |||| |||||||| || |||||| | ||| |||| || Sbjct 34475 TTCCTCTTATAAATAATTTCTTGGTTGTTAATAGGGGAAAA---TATTC--AGCTAAAT- 34528 Query 97649 TAGACTGCAT------TCCAAAAACACTCAATGTTCCAACTCCTGTTCTGTC 97694 || ||| ||| |||||| ||| ||| |||||||||||||| || Sbjct 34529 TATACTTCATCATATATCCAAATTTACTTAATACACCAACTCCTGTTCTATC 34580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346766988619250