Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq148 250 4e-61 seq698 172 8e-38 seq147 134 2e-26 >seq148 Length=40499 Score = 250 bits (276), Expect = 4e-61 Identities = 510/750 (68%), Gaps = 11/750 (1%) Strand=Plus/Plus Query 205336 GGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTAACATAT 205395 ||||| |||| || | | | || ||| |||||| | || |||||||| |||| Sbjct 33895 GGAAAAGGGTAGGGAATTCTGTTTAGTTGAATTTTTAGACTATCTATATGATTGTTATAT 33954 Query 205396 ATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGTGCA 205455 || || ||||| || | | || || ||||| |||| ||| ||| || || ||| Sbjct 33955 ATGTGAGCATTTCCTAAAACGTGTATGAATTCTGCAGGTTGTAAGTTACATACTTGAGCA 34014 Query 205456 ATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATATCA 205515 | ||| || || || | ||| |||| ||| || || ||||| | || | |||| Sbjct 34015 AGCATGTAGGTGAAAATTGAGTAAGAGGCAATATTGAAGGGAACACCAAGCCCTAAATCA 34074 Query 205516 GCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAATTGTACA 205575 |||| ||||||||| ||||| | |||| || | | || |||||| Sbjct 34075 CAAGATCGTTGATACATGATACATGATA---ATTTCCCATCGAAAATATAAAATTGGCAT 34131 Query 205576 AAACAATGACAAGGTGGTATAACCATATTTTCAACAT-CTATAGGATTCCAGGCTGTTAA 205634 ||| |||||||||||||| |||| || || | || || || | ||||| || || Sbjct 34132 AAAATATGACAAGGTGGTAATGCCATTTTATCCAAATCCTTTACG-TTCCATGCACACAA 34190 Query 205635 TATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAATTGATC 205694 || || ||||| | |||| ||||||||| ||||||||||| | ||| |||||| Sbjct 34191 AATAATTCTTCTACTTAATGGTTCATTTTTTATCAAATTTATAATATTTTTTAGTTGATC 34250 Query 205695 AAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCA 205754 || ||||| ||| |||||| || ||||| |||||| ||| |||||||| | ||| Sbjct 34251 AATTCCTTTATTATCATAATTATCATACATATTTGTATATTCAGCTCCAAAATGTCTCCA 34310 Query 205755 TTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttt 205814 |||||||||||||| ||||||||||||| | ||| ||||||| ||| | || | Sbjct 34311 TTGAAAACCATAAATTGGACCTAAATCATTTACTTCTCTATCAAATAAATTTCTATTATC 34370 Query 205815 tatatattttaatgatccattttcatcccaaatatggattcctttattttttaGAATATT 205874 || | ||| | | ||||||| | ||||| || | ||||||| | |||||| Sbjct 34371 TAAAAATTCTCTAGTTCCATTTGCTTCCCATATTCTCACATTTTTATTTAACAAAATATT 34430 Query 205875 TGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACAT 205934 | ||| ||| || ||||||||| | ||||||||||| ||||||||| ||| | Sbjct 34431 TCCATTTGTTTCCCCTCTTATAAACCAAAGTAATTCTTCAATAATTCCTCTTATAAATAA 34490 Query 205935 TGATTTTGTTGTAAATAATGGAAATGAATCATCTAATTTATATTTCATAGTTAAACCATA 205994 | || ||||| |||| ||||| | ||| |||| ||||| ||||| | | ||| | Sbjct 34491 TTTCTTGGTTGTTAATAGGGGAAAATATTCAGCTAAATTATACTTCATCATATATCCAAA 34550 Query 205995 TACAGTTTTTGTATCTACACCTGTTCTAT--TTTTGGTTATTCTTCCATTAGATAAT-AT 206051 | | || | | | || |||||||||| | || |||| ||||||| || || | Sbjct 34551 TTTACTTAATACACCAACTCCTGTTCTATCATCCTGTTTAT--TTCCATT-TATCATAAC 34607 Query 206052 TTCTGATATACCTTTTAAATATTGATATTC 206081 || ||||| |||||||||||||| || Sbjct 34608 ATCGTATATAATATTTAAATATTGATACTC 34637 >seq698 Length=7480 Score = 172 bits (190), Expect = 8e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | || || | ||||| || || || || | || ||||| || Sbjct 6092 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATC 6033 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| ||||||||||||||| ||||| |||||||| ||||| Sbjct 6032 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 5973 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | || ||||||||||| ||||| |||||| | |||||||| ||||||||| Sbjct 5972 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAA 5913 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || |||||||| ||||| ||||| || ||||| ||| |||| || Sbjct 5912 CATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGG 5865 Score = 167 bits (184), Expect = 4e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | || || | ||||| || || || || | || ||||| || Sbjct 5630 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 5571 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| ||||||||||||||| ||||| |||||||| ||||| Sbjct 5570 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 5511 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | || ||||||||||| ||||| || ||| | |||||||| ||||||||| Sbjct 5510 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 5451 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 || || |||||||| ||||| || || || ||||| ||| |||| ||| || || Sbjct 5450 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGTTTTTAA 5396 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | || || | ||||| || || || || | || ||||| || Sbjct 5861 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 5802 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || ||||||||||||||| ||||| || ||||| ||||| Sbjct 5801 GGATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 5742 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | || ||||||||||| ||||| || ||| | |||||||| ||||||||| Sbjct 5741 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 5682 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || |||||||| ||||| || || || ||||| ||| |||| || Sbjct 5681 CATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 5634 Score = 141 bits (156), Expect = 1e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 124565 AGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAA 124624 ||| ||||| || || | || |||| || ||||| ||| ||| |||| ||| Sbjct 6296 AGGAAAAACGATCACCTTGGATGTTGAGTCATCGGATACCATTGAGAATGTAAAGGCGAA 6237 Query 124625 AATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACA 124684 |||||||||||| ||||| |||||||| ||||| ||||| | || ||||||||||| || Sbjct 6236 AATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAGCA 6177 Query 124685 ATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTT 124744 ||| || ||| | |||||||| |||||||| || ||||| ||||| || || ||||| Sbjct 6176 ATTGGAAGATGGAAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTTACATTT 6117 Query 124745 GGTTTTACGTTTACGAGGTGG 124765 || ||||| ||| |||| || Sbjct 6116 AGTCTTACGATTAAGAGGAGG 6096 >seq147 Length=23875 Score = 134 bits (148), Expect = 2e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| |||| ||| ||| || ||||| || | | ||| ||||| || Sbjct 23404 AATGCAAATATTTGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATCAGT 23345 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| ||| ||||| || |||||||| ||||| |||| || || | || Sbjct 23344 AGATACTATTGAAAATATTAAAGCA-AAAATTCAGGATAAGGAAGTAATTCCCCTCGACG 23286 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | ||||||||||||||||||||||| | | ||| ||| | ||||||| Sbjct 23285 AACAAAGATTAATTTTTGCAGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATTATA 23226 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||| || |||||||| ||| || | ||||| Sbjct 23225 ATATCCAGAAAGAATCCACTCTGAACTTGGT 23195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755417991120000