Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq698 96.9 3e-15 >seq698 Length=7480 Score = 96.9 bits (106), Expect = 3e-15 Identities = 174/250 (70%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| | ||||| || || ||||| | ||||| ||||| || ||||| ||||| | Sbjct 5402 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATC--T 5459 Query 118571 CATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 ||| || | | ||| || | || ||||| || | || | | ||||||||||| Sbjct 5460 GATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGT 5519 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTC 118687 ||||| || ||||| ||| |||||| || || | || | ||| |||| || | || Sbjct 5520 GGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGAT-TC 5578 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTC 118747 || |||| ||| | || || || |||| ||||| ||||| |||||||| || | | Sbjct 5579 AACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATTCCTCCTCC 5638 Query 118748 TATTACTCGT 118757 | ||| |||| Sbjct 5639 TCTTAATCGT 5648 Score = 89.7 bits (98), Expect = 4e-13 Identities = 172/249 (69%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | ||||| || || || || | ||||| ||||| || ||||| ||||| | Sbjct 5865 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATC--TG 5922 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| || | | |||||| | || ||||| || | || | | ||||||||||| | Sbjct 5923 ATAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTG 5982 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 |||| || ||||| ||| |||||| || || | || | ||| |||| || | || Sbjct 5983 GTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGAT-TCA 6041 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCT 118748 || |||| || | || || || |||| ||||| ||||| |||||||| || | || Sbjct 6042 ACATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATTCCTCCTCCT 6101 Query 118749 ATTACTCGT 118757 ||| |||| Sbjct 6102 CTTAATCGT 6110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433809118585300