Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq698 136 6e-27 >seq698 Length=7480 Score = 136 bits (150), Expect = 6e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | || ||| || || ||||||||||||||||| ||| ||||||||||| Sbjct 5633 TCCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGA 5692 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | ||| || ||||| ||||| ||||| || |||||||||||||| || || Sbjct 5693 TAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGG 5752 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| |||||||| Sbjct 5753 AATTCCTTCCTTATCTTG 5770 Score = 132 bits (146), Expect = 7e-26 Identities = 112/138 (81%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | || ||| || |||||||||||||||||||| || ||||||||||| Sbjct 5864 TCCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGA 5923 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | ||| || ||||| ||||| ||||| || |||||||||||||| || || Sbjct 5924 TAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 5983 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 5984 TATTCCTTCCTTATCTTG 6001 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || ||| || || ||||||||||||||||| || ||||||||||| Sbjct 5403 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 5462 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || ||||| ||||| ||||| || |||||||||||||| || || Sbjct 5463 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 5522 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 5523 ATTCCTTCCTTATCTTG 5539 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | || ||| || |||||||| |||||||| || || |||||||| | Sbjct 6095 TCCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAA 6154 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | ||| || ||||| ||||| ||||| || |||||||||||||| || || Sbjct 6155 TAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 6214 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 6215 TATTCCTTCCTTATCTTG 6232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743488991328000