Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1322 282 4e-71 >seq1322 Length=3124 Score = 282 bits (312), Expect = 4e-71 Identities = 624/920 (68%), Gaps = 23/920 (3%) Strand=Plus/Minus Query 15902 AGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACT 15961 ||| |||| || | ||| ||| | | | |||||| ||| ||||| ||| ||| Sbjct 2977 AGACAAAAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACA 2918 Query 15962 CTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGA 16021 | |||||||| || ||||||||||||| || ||||| ||||| ||| ||||||| Sbjct 2917 CGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGA 2858 Query 16022 TTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAACAATAATCTATCCGCCACA 16078 ||||||| | || | ||| || || || |||||| ||||| ||| || ||| Sbjct 2857 TTTTTTGCATAAAAAATTTTTGAACAACCTAAACATTCCAA---TAATCGATCTGCTACA 2801 Query 16079 AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCT 16138 |||||||||||||| |||||| | ||||| || ||||| | | ||| | | | Sbjct 2800 AATTCTATATACTGAGACATTAATCTTGAATTCATCCCAATTAAATCACAAGGTAGAGAT 2741 Query 16139 TCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACA-CT 16197 || || ||| | |||| | | ||| ||||| | | |||| | | || || || Sbjct 2740 TCACATATGAAAGATCTTTCAACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCT 2681 Query 16198 ATT--TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAAT 16255 | ||| | | |||||| || | |||| |||| |||||| ||| ||| Sbjct 2680 TCTGGTAATTTATTTTCTAATAAAC---TATATATTAAACAATTAAAATCTGTATGTAAT 2624 Query 16256 CCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC-TGGCATTAGTCCTCGTTT 16314 ||||| || ||||| |||| || || ||| ||||| || || ||| | || |||| Sbjct 2623 CCTTCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTCT-GTTT 2565 Query 16315 TTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAA 16374 ||||| |||||| || || ||| |||| ||| | |||||||||||| ||| Sbjct 2564 TTTAAACCAAAAAATTGCACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATT 2505 Query 16375 TGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatt 16434 ||| || | || || | | | |||| || | |||||||||| ||||||| Sbjct 2504 TGCTACAATTCTTTCTGCAAATGA---ATTTGTATCATTTATCCATTTTGCAGCCCAAAG 2448 Query 16435 tgctttttgtttAACA-CAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTT 16493 |||||| | ||||| | | | || || || || |||| |||||||| ||||| Sbjct 2447 TGCTTTATTCTTAACTGCTGGT-ATATTTTCAATAGCATGAAATAAATTTAAACGTTCTT 2389 Query 16494 TGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCA 16553 | |||| |||||| |||| || |||||||| ||| |||||||||| || || || | Sbjct 2388 TATCATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTA 2329 Query 16554 TTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACC 16613 |||||| ||||| ||||| | ||||||| | ||||| ||||| ||||| | Sbjct 2328 CTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCT-TAAAAAC 2270 Query 16614 TTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGT 16672 || || || || ||||| ||||| ||||| |||||||||||||| || | | ||| Sbjct 2269 TTACTAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGT 2210 Query 16673 TTAATAAAAtttttttCGTTATC-TGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAA 16731 |||||||||| |||||| || || | || |||| | | || ||||| ||||||| Sbjct 2209 TTAATAAAATGTTTTTCATTTTCATTTAATTTTTCA-AAATCTTTTAAATCACTTGATAA 2151 Query 16732 ATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 ||| | ||||| | |||||||| || || | || |||||||| | | ||| | || Sbjct 2150 ATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATC 2091 Query 16792 TTCGTAAACAATAGGAAACA 16811 | ||| | ||| ||| ||| Sbjct 2090 TGGGTATAAAATTGGATACA 2071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462488729865000