Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq148 190 2e-43 >seq148 Length=40499 Score = 190 bits (210), Expect = 2e-43 Identities = 333/478 (70%), Gaps = 10/478 (2%) Strand=Plus/Minus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 |||||| ||||||| || || ||||| | ||| || ||||||| ||| | ||| Sbjct 34514 TTTCCCCTATTAACAACCAAGAAATTATTTATAAGAGGAATTATTGAAGAATTACTTTGG 34455 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT-TGGAG 20162 ||||| | ||| ||||||| | | |||| || || | | ||| | ||| Sbjct 34454 TTTATAAGAGGGGAAACAAATGGAAAT-ATTTTGTTAAATAAAAATGTGAGAATATGGGA 34396 Query 20163 CGCACATGGATCTAAGCAATTTTTACACA---GCAATGGATTTGACAACCGTCAAGAGGG 20219 ||| ||||| ||| |||||||| | | | ||| |||||| | | ||| Sbjct 34395 AGCAAATGGAACTAGAGAATTTTTAGATAATAGAAATTTATTTGATA---GAGAAGTAAA 34339 Query 20220 GGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACAT 20279 ||||| ||||| | ||||| |||||||||||||||||||||||||||||| | || Sbjct 34338 TGATTTAGGTCCAATTTATGGTTTTCAATGGAGACATTTTGGAGCTGAATATACAAATAT 34279 Query 20280 GAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAA 20339 | | |||||| | ||||| | |||||| || ||||| |||| ||||| || || Sbjct 34278 GTATGATAATTATGATAATAAAGGAATTGATCAACTAAAAAATATTATAAATTTGATAAA 34219 Query 20340 AAC-GAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTT 20398 || ||||| | | |||||||||||||| || || ||||||| || ||| || | Sbjct 34218 AAATGAACCATTAAGT-AGAAGAATTATTTTGTGTGCATGGAACGTAAAGGATTTGGATA 34160 Query 20399 TAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGT 20458 |||||| || || || |||||||| ||||||||||||| || || |||| | Sbjct 34159 AAATGGCATTACCACCTTGTCATATTTTATGCCAATTTTATATTTTCGATGGGAAATTAT 34100 Query 20459 CGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 | ||| |||||||||||||| |||| | || || |||||||| ||||||||||| Sbjct 34099 CATGTATCATGTATCAACGATCTTGTGATTTAGGGCTTGGTGTTCCCTTCAATATTGC 34042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399164418153625