Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1322 242 4e-59 >seq1322 Length=3124 Score = 242 bits (268), Expect = 4e-59 Identities = 620/928 (67%), Gaps = 27/928 (3%) Strand=Plus/Minus Query 13875 AAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTT 13934 ||||||| | ||| | | | | || ||||| || ||| ||||| ||| ||| | || Sbjct 2973 AAAAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTT 2914 Query 13935 TTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTG 13994 ||||||| ||||| ||||| |||| || || || ||||| ||| ||| |||||| Sbjct 2913 TTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTT 2854 Query 13995 TTGACATAAACACTTTATCA-CAACCTAG---TTCTAATAGTAATCTATCCGCAATGAAC 14050 ||| |||||| | ||| | | ||||||| ||| |||| ||| ||| || | || Sbjct 2853 TTG-CATAAAAAATTTTTGAACAACCTAAACATTCCAATA---ATCGATCTGCTACAAAT 2798 Query 14051 TCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTG 14110 || ||||| ||||||||||| ||||||| || |||| | ||| | | ||| Sbjct 2797 TCTATATACTGAGACATTAATCTTGAATTCATCCCAATTAAATCACAAGGTAG-AGATTC 2739 Query 14111 GT-TAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATT 14169 || || | |||| | ||||| || || | |||| | ||| || ||| | Sbjct 2738 ACATATGAAAGATCTTTCAACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTC 2679 Query 14170 AGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAATCACAATGAAGGCCC 14227 | | | |||||| | || | |||||||| |||||| ||| | || Sbjct 2678 TG--GTAATTTATTTTCTAATAAACTATATATTAAACAATTAAAATCTGTATGTAATCCT 2621 Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAATCCTCGtttttt 14286 |||||||||||||| ||||| || ||| || | ||| || || || || ||||||| Sbjct 2620 TCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTCT-GTTTTTT 2562 Query 14287 tAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 |||||||| |||||| || || ||| | ||| || ||||| ||| || Sbjct 2561 AAACCAAAAAATTGCACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGC 2502 Query 14347 TATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGA 14406 || | || |||| |||| || | | | || |||||||||| |||||| | Sbjct 2501 TACAATTCTTTCTGCAAATGAATTTGTATCATT---TATCCATTTTGCAGCCCAAAGTGC 2445 Query 14407 tttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGT 14466 ||| || |||| || |||||||||||| |||||||| | |||||| Sbjct 2444 TTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATC 2385 Query 14467 ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGC 14526 | | || || ||||||||||||| || ||| |||| || ||||||||||| | || Sbjct 2384 ATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGC 2325 Query 14527 TATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTC 14586 ||| ||||| ||||| | ||||||||| ||| || ||| ||||| ||| | Sbjct 2324 TATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCT-TAAAAACTTAC 2266 Query 14587 G-GCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAA 14645 ||||||||||| ||||||||||||||||||||||||||||| || | | ||||| Sbjct 2265 TAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAA 2206 Query 14646 TAAAGTATTGCTC---TTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGAT 14702 |||| | || || |||||| | ||||| |||| |||||| | || | || Sbjct 2205 TAAAATGTTTTTCATTTTCATTT---AATTTTTCAAAATCTTTTAAATCACTTGATAAAT 2149 Query 14703 CTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTT 14762 ||| ||| ||| |||||||||| || | ||||||||||| | |||| | ||| Sbjct 2148 CTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATCTG 2089 Query 14763 TATATAATATAGGAAAAACTACAAATCT 14790 ||||| || ||| | | | |||||| Sbjct 2088 GGTATAAAATTGGATACAATGTAAATCT 2061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482321331987000