Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq147 84.2 2e-11 >seq147 Length=23875 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || || || |||||||| || || || || || | ||||| | | ||| Sbjct 23194 TACCAAGTTCAGAGTGGATTCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACATTC 23253 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||||| || ||| | || | |||||||| || | ||| | |||||||||| Sbjct 23254 TAATTGTTTTCCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTG 23313 Query 18236 AATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| |||||| | | | ||| ||| || | | || |||| || || ||| Sbjct 23314 AATTT-TTGCTTTAATATTTTCAATAGTATCTACTGATTCAACCTCAAGGGCAATTGTTT 23372 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 | || | |||||||||||||| |||||||||||| Sbjct 23373 TTCCCCTTAATGTTTTTACAAATATTTGCATTTTT 23407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379325391398625