Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1322 123 2e-23 seq698 86.0 6e-12 >seq1322 Length=3124 Score = 123 bits (136), Expect = 2e-23 Identities = 206/295 (70%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 57536 TAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||||| ||| ||| ||| ||| ||||| ||||| | | || ||||| ||||| Sbjct 2060 TAGATTTACATTGTATCCAATTTTATACCCAGATGTTTGGGATTTTTATAAAAAAGCAGA 2119 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655 |||||| |||||||| | |||||| |||| | || | ||| | | |||| || Sbjct 2120 AGCATCATTTTGGACAGCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATTTTGAAAA 2179 Query 57656 CCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGA 57715 | || ||| ||| | | ||||||||||||| || || || ||||| || || || Sbjct 2180 ATTAAATGAAAATGAAAAACATTTTATTAAACATGTTTTAGCATTTTTTGCAGCTAGTGA 2239 Query 57716 TGGTATTGTTAACGAGAATTTGG-TCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGG 57774 |||||| || || ||||||| | | ||| |||| | |||||| ||| | || || | Sbjct 2240 TGGTATAGTATTAGAAAATTTGGCTAGTAAG-TTTTTAAGAGAAGTTCAAATTACAGAAG 2298 Query 57775 CGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTA 57829 | | | |||||| ||||||| | || | |||||| | |||||||||| ||| Sbjct 2299 CTAAAAAATTTTACTCATTTCAAATAGCAGTAGAAAACATACATTCAGAAACGTA 2353 >seq698 Length=7480 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || ||||||| || || |||||| |||| |||||| | || Sbjct 5629 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG 5570 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || ||| || |||||||| | || ||||| ||| Sbjct 5569 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 5510 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | ||||||| || || || || |||||||| | | || || | | |||||||| Sbjct 5509 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGA-TGGAAGAACATTATCAGATTATAA 5451 Query 31372 CATTCAAAAAGAATCGACT 31390 ||| || |||||||| ||| Sbjct 5450 CATCCAGAAAGAATCTACT 5432 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || ||||||| || || |||||| |||| |||||| | || Sbjct 5860 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG 5801 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || ||| || |||||||| | || || || ||| Sbjct 5800 GATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAG 5741 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | ||||||| || || || || |||||||| | | || || | | |||||||| Sbjct 5740 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGA-TGGAAGAACATTATCAGATTATAA 5682 Query 31372 CATTCAAAAAGAATCGACT 31390 ||| || |||||||| ||| Sbjct 5681 CATACAGAAAGAATCTACT 5663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445743972378000