Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq700 383 2e-101 seq1322 206 3e-48 >seq700 Length=13977 Score = 383 bits (424), Expect = 2e-101 Identities = 997/1512 (66%), Gaps = 25/1512 (2%) Strand=Plus/Plus Query 62365 CTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAA 62424 || |||| | ||| || || || || |||||||||| | |||||| | | ||||| Sbjct 4034 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4093 Query 62425 TATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 62484 |||| || || |||||||| | || ||||| ||||| || || || | ||| ||||||| Sbjct 4094 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4153 Query 62485 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62544 | ||||||||||| | | ||| |||||| | || | | || | ||||| ||||| | Sbjct 4154 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4213 Query 62545 GATGTTCCCAATTCCAAAGATC-----CGACGGTACAACANNNNNNNNNNNATATTGTAG 62599 | | |||||||||| | | || | | | | |||| || Sbjct 4214 GTTCAGTCCAATTCCAATATTTATTATCAACCTTT--ATATTCCACATATCAAATTGAAG 4271 Query 62600 AATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTA 62658 |||||| | || || | || | ||| |||| | |||||| || | | | ||||| Sbjct 4272 AATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTGAGCTA 4330 Query 62659 GTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGAT 62718 || | | ||||||||| | ||||| || |||||||| || | ||||||| | Sbjct 4331 ATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATT 4390 Query 62719 CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTT 62778 ||| |||||| || | ||||| |||| || ||||| | || |||||||||| Sbjct 4391 CTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAATCCTT 4450 Query 62779 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 62838 | |||||||| || || ||||||||||| | || || ||||||||||| || ||||| Sbjct 4451 GTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACAGGAT 4510 Query 62839 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCA 62898 ||||||| | ||||||||||| | | |||||| ||| | ||| | || | | Sbjct 4511 AATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCATATA 4570 Query 62899 GTTTGAGAAAATCAAA---TCGCCCATCTAT---TACAAACATGTTCAATGCAACAGATG 62952 ||| ||||| ||| | ||| | |||||| | || |||| ||||| Sbjct 4571 ATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATAGATG 4630 Query 62953 CCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGAT 63012 | | ||||| || || || |||| | | ||||| ||||| ||| || |||| Sbjct 4631 CTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACATAGAT 4690 Query 63013 TACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 63072 ||||||| || || || |||||||||| ||||||| || ||||| | ||| |||| Sbjct 4691 TACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTTAT 4750 Query 63073 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 63132 | | || |||| ||| ||||| || ||| || || ||| || ||| | || Sbjct 4751 ACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAATCTT 4810 Query 63133 GAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGAGTATACAATCGTT 63189 | || || || || ||| | || ||||| ||| ||| ||| ||| || Sbjct 4811 GCGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAATTTTT 4867 Query 63190 CGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACC 63249 | || || || ||||| | || | |||||||||| |||||||| || | || Sbjct 4868 CAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGTCC 4927 Query 63250 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63309 | | | | || || |||| ||||||||| | ||| || | ||||| ||| ||||| Sbjct 4928 AATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAAAATA 4987 Query 63310 GATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63369 |||||| | || ||| || || || ||| ||| | | ||| || ||| | | | Sbjct 4988 AATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCAAATA 5047 Query 63370 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63429 |||| |||||||| ||||| | |||| || | ||| | ||| ||| || | Sbjct 5048 TATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCTT 5107 Query 63430 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTTGAT 63488 |||||| |||||||| || | ||| ||||||| |||||||| | |||| ||||||||| Sbjct 5108 GATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTTGAT 5166 Query 63489 ATACCATTGGTACCGGAGATATA-GCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 |||||||| || || ||||| | | | |||| |||| | || || ||| Sbjct 5167 ATACCATTTGTTCCTCTTATATATGAATTTTGT-CCACGTATATCTTGTACTGCTACACC 5225 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 || || ||||| ||||| || || || ||| | ||||| || ||| | || ||||| Sbjct 5226 AATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATTCCTTC 5285 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCC 63667 || ||| | |||| |||| |||||| ||||| || | | | || || Sbjct 5286 AATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGTGTCCC 5345 Query 63668 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63727 | ||||||||| || || | || || ||||| |||||| || | |||| || || Sbjct 5346 TGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATATGT 5405 Query 63728 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63787 || | ||| |||| ||| | ||| || || | || || | ||||| || || Sbjct 5406 TTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATCAAATG 5465 Query 63788 CTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63847 || |||||||| | |||||| || || || ||| || || || |||| || ||||| Sbjct 5466 TTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAACGTTTT 5525 Query 63848 AAAACCAAAATA 63859 |||||||||||| Sbjct 5526 AAAACCAAAATA 5537 >seq1322 Length=3124 Score = 206 bits (228), Expect = 3e-48 Identities = 576/870 (66%), Gaps = 24/870 (3%) Strand=Plus/Minus Query 33272 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 33331 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 2954 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 2895 Query 33332 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAttttttt 33391 ||||| | || || ||||| ||| ||| ||||| | ||| |||||||| Sbjct 2894 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGA 2835 Query 33392 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCAT 33448 | | || || ||| ||| |||| |||||| || ||||||||||| ||| | Sbjct 2834 ACAACCTAAACATTCC--AAT-AATCGATCTGCTACAAATTCTATATACTGAGACATTAA 2778 Query 33449 TTCACAATTCATTCCTATGAGTTTAACTGGAAGAGC--CACAGTAAGAAAT-TCTTGTTC 33505 | ||||||| || || | | | || |||| |||| || |||| |||| || Sbjct 2777 TCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACA-TATGAAAGATCTT--TC 2721 Query 33506 AATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGT---AA 33562 || || || | | | | |||| | |||| |||||| | || | || Sbjct 2720 AACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAA 2661 Query 33563 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAA 33622 |||| || | || ||||| ||||| || | || || ||||||||||||| Sbjct 2660 TAAAC---TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAG 2604 Query 33623 TTCGTTAGAAAACGTGAGTCCGGGCA--TTAGGCCACGCTTTTTAAGCCAAAATATGGAA 33680 ||| ||| ||| || ||||| | | ||| | | ||||||| |||||| || | | Sbjct 2603 TTCATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATTGCA 2546 Query 33681 GCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA 33740 || || ||| | || ||||| || ||| || | || ||| ||| || Sbjct 2545 CAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCA 2486 Query 33741 TAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 | | |||| |||||| ||| ||||||| || || || || || || Sbjct 2485 AATGAATTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGT 2426 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860 || |||| || |||| ||| | || ||| ||| |||||| | |||| |||| Sbjct 2425 ATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCA 2366 Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 || | | ||| ||| |||| ||||| |||||||| | || || |||||| ||| || Sbjct 2365 ATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAAT 2306 Query 33921 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCAC 33979 | |||| || ||||| || |||||| | |||| | | || || |||||||| || Sbjct 2305 TTTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATAC 2247 Query 33980 TATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 34039 ||| |||||||| ||||||||||| || || |||||||| ||||||| |||||| | | Sbjct 2246 TATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTC 2187 Query 34040 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 34099 ||| ||| | |||| || | ||| | |||| ||| | |||||| |||||||||| Sbjct 2186 ATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAA 2127 Query 34100 TGATGCCTCTGCCTTTTTATACATATTCCA 34129 |||||| ||||| |||||||| | || ||| Sbjct 2126 TGATGCTTCTGCTTTTTTATAAAAATCCCA 2097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629785912302000