Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq700 643 1e-179 seq1322 331 9e-86 >seq700 Length=13977 Score = 643 bits (712), Expect = 1e-179 Identities = 1056/1508 (70%), Gaps = 37/1508 (2%) Strand=Plus/Plus Query 37126 TGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTA 37185 || ||||| ||||| || |||||| | ||||||||| || ||||||||||| Sbjct 4045 TGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAATATTGCTAGTG 4104 Query 37186 TATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGT 37245 || ||||||| || ||||| || | |||||| || || ||||||||||||||||| ||| Sbjct 4105 TACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAGTAGGCATAGGT 4164 Query 37246 GCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAA 37305 |||| || | |||||| ||||||||| | || ||| | | ||| |||||| ||||| Sbjct 4165 GCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAAGTTCAGTCCAA 4224 Query 37306 TCCCATAAATCTGTTGGGTTCTTTAA----CCACATATCATATTGTAGAATACCTTTACT 37361 | ||| | || | || | || | |||||||||| |||| |||||||||| || Sbjct 4225 TTCCA-ATATTTATTATCAACCTTTATATTCCACATATCAAATTGAAGAATACCTTGGCT 4283 Query 37362 CGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGA 37421 |||||| | | | ||| | ||||| || ||||||| ||||| ||| || |||| Sbjct 4284 AGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTGAGCTAATTC-CA--TAGA 4340 Query 37422 ---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTC 37478 ||||| ||| |||||||| || ||||| |||||| | |||||||| ||||||||| Sbjct 4341 CATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATTCTTTTGCTTC 4400 Query 37479 TTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGAT 37538 || ||| | | ||| | || | ||||| |||||| || || || ||||| || Sbjct 4401 ATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAATCCTTGTACACCAAT 4460 Query 37539 ACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGAT 37598 ||||| ||||||||| | | || ||||| | |||| | || ||||||||||| | Sbjct 4461 TCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACAGGATAATAATTTCT 4520 Query 37599 ATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA 37658 ||||| ||||| | || |||| | | ||||| |||||| || || | || Sbjct 4521 TTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCATATAATTTTTTAAA 4580 Query 37659 CATAAATACGTTATTAT---TA---ACAAATTTACTCAACGAAATAGATCCTAGATTACA 37712 |||| | || || | || |||||||||| || | ||||||| ||| ||||| Sbjct 4581 ATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATAGATGCTAAGTTACA 4640 Query 37713 TACAGCAACTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTACAGAGATTACTCGATC 37771 ||||||||||||||| || | || ||| || || || ||| |||||||| || Sbjct 4641 AACAGCAACTTCATCTG-GTGATGTATATTCGATTATTTCACAACATAGATTACTACATT 4699 Query 37772 TAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATAT 37831 ||||||| || ||||| ||||||| ||||| |||||| ||||||||||| | |||| Sbjct 4700 TAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTTATACAACATAT 4759 Query 37832 ACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAA 37891 | || ||| |||||||||| | | ||||| ||||||| |||||| ||| Sbjct 4760 ATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAA--TCTTGCGCTAA 4817 Query 37892 CGATCGCTTTAAttt-----ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATC 37946 | | ||| || ||||||| ||| |||| | ||||||||| | ||| || Sbjct 4818 T-ACAGTTTTTTTTCCTAAATTTTCTTC--TTCATATTTTTCATATAATTTTTCAAATTC 4874 Query 37947 ATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTC 38006 | |||||| || | ||| ||||||||||| ||||||||||| | ||| | || Sbjct 4875 TTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGTCCAATTTTT 4934 Query 38007 ATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTT 38066 || || || || | || |||||| ||||| |||||||| | ||| |||||||||| | Sbjct 4935 ATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAAAATAAATCTCT 4994 Query 38067 GGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGC 38126 | || ||||||| || || ||| ||||| || |||||| || |||||||| | Sbjct 4995 AGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCAAATATATCTGA 5054 Query 38127 GTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAAT 38186 ||||||||||| ||||| | | | || |||| |||||| | || || |||| | Sbjct 5055 ATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCTTGATCTAC 5114 Query 38187 ATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTT 38246 ||||||| |||| | ||| | | ||||||||| ||||||| || || ||| | || || Sbjct 5115 ATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAATCCGTTTGATATACCATT 5174 Query 38247 TATACCGGATATATAAGTACCCTTAGCTCGTATAT----TACTTATCGACAATCCTATTC 38302 | | || |||||| | | | | ||||||| |||| | ||| || || | Sbjct 5175 TGTTCCTCTTATATATGAATTTTGTCCACGTATATCTTGTACT--GCTACA--CCAATAC 5230 Query 38303 CACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATAC 38362 |||||||| ||| ||| ||||| ||||| ||||| || ||||| || ||||| || Sbjct 5231 CACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATTCCTTCAATCG 5290 Query 38363 TGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGT 38422 || | || || ||||| |||||| ||||| || || ||| || || | | Sbjct 5291 AATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGTGTCCCTGAAT 5350 Query 38423 TAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTA 38482 |||||||||| || | ||||||| | || |||||| |||| || ||||||||||| Sbjct 5351 TAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATATGTTTCTA 5410 Query 38483 TTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTG 38542 | | | |||| |||| | || ||||| | ||||| ||||||| || |||||||| Sbjct 5411 ATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATCAAATGTTGTG 5470 Query 38543 GTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTC 38602 |||||||||| ||||||||||| | || ||| || ||||||| ||||| | | Sbjct 5471 GTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAACGTTTTAAAAC 5530 Query 38603 CAAAATAA 38610 |||||||| Sbjct 5531 CAAAATAA 5538 >seq1322 Length=3124 Score = 331 bits (366), Expect = 9e-86 Identities = 584/839 (70%), Gaps = 18/839 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || ||||| ||| ||| ||| ||| ||||| || || || |||| ||| || || | Sbjct 2935 TTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAA 2876 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | |||||||||| | | ||| || | |||| ||||||||| | ||| Sbjct 2875 TCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACCTAAACATTCCAAT 2816 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||| |||||| || ||||||||||||||||||||||| | ||||||| || || | | Sbjct 2815 AATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAATTCATCCCAATTAAA 2756 Query 11519 TCCACCGGAATAG---CAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATT 11575 || || | || || | | ||| | || |||| | | ||| || || | | Sbjct 2755 TCACAAGGTAGAGATTCACATATGAAAGA-TC--TTTCAACTTCAACAGCTTCTTTAACA 2699 Query 11576 ATCGACGTTATAACTTCCTTAGATGGTGGATGT---AATAAATGTTTAAACATTAAACAC 11632 || | | |||||| | | | | || | |||||| || | |||||||| Sbjct 2698 ATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TATATATTAAACAA 2642 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 |||||| |||||| ||||| |||||||| |||||||||||| ||| || | ||| Sbjct 2641 TTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCA 2582 Query 11693 GGCA-TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 | | | || || ||||||| | |||||| || ||| ||| |||| ||| | ||| Sbjct 2581 TGTAATTTATTCT-GTTTTTTAAACCAAAAAATTGCACAAAAACTACCACTAAATAGTAT 2523 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATATCC 11810 || || ||| |||| |||||| | ||||||| || || | |||| | | ||||| Sbjct 2522 ACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGTATC-ATTTATCC 2464 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 ||||| |||||| ||||| || || || | || |||| ||||| | ||||| Sbjct 2463 ATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATA 2404 Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 ||| | |||| ||| |||| ||| ||| |||| || | |||||| ||| |||||| Sbjct 2403 AATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTG 2344 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990 |||| || ||||| | |||||||||||| || || | || |||| | || | Sbjct 2343 AATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAA 2284 Query 11991 CATCCACATAAAATCTTTCC-GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 | || | ||||| ||| | || ||||| || ||| ||||||||||||| ||||||| Sbjct 2283 CTTCT-CTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAA 2225 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 ||||||| | |||||| ||||| | |||||| | || | ||||||| || |||| | | Sbjct 2224 AATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTT 2165 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATA 12168 ||||| |||||||||||| ||||||| | |||||||| ||| ||| || |||||| Sbjct 2164 AAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 2106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468501227346000