Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq700 369 5e-97 seq1322 224 1e-53 >seq700 Length=13977 Score = 369 bits (408), Expect = 5e-97 Identities = 996/1517 (66%), Gaps = 35/1517 (2%) Strand=Plus/Plus Query 65158 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 65217 || |||| | ||| ||||| || || ||||||||| | |||||| | | ||||| Sbjct 4034 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4093 Query 65218 TATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 65277 |||| || || |||||||| | ||| ||||| ||||| || || || | ||| ||||||| Sbjct 4094 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4153 Query 65278 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 65337 | ||||||||||| | | ||| |||||| | || | | || | ||||| ||||| | Sbjct 4154 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4213 Query 65338 GAGGTTC---CCAATTCCAAAG------ATCCGACGGTACAACNNNNNNNNNNNNNNNTT 65388 | ||| |||||||||| ||| | || | || Sbjct 4214 G---TTCAGTCCAATTCCAATATTTATTATCAACCTTTATA---TTCCACATATCAAATT 4267 Query 65389 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 65447 | |||||||| | || || | || | ||| |||| | || ||| || | | | | Sbjct 4268 GAAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTGA 4326 Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 65507 |||| ||| | | ||||||||| | ||||| || ||||| || || | |||||| Sbjct 4327 GCTAATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTT 4386 Query 65508 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 65567 | |||| |||||| || | ||||| |||| || ||||| | || |||||| Sbjct 4387 AATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAAT 4446 Query 65568 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 65627 ||||| |||||||| || || ||||||||||| | || || ||||||||||| || | Sbjct 4447 CCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACA 4506 Query 65628 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 65687 ||||||||||| | ||||||||||| | | |||||| ||| | ||| | || Sbjct 4507 GGATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCA 4566 Query 65688 TTCAGTTTGAGAAAATCAAA-----TCGCTCATCTAT-TACAAACATGTTCAATGCAACA 65741 | | ||| ||||| ||| | | | ||| |||||| | || |||| | Sbjct 4567 TATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATA 4626 Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 ||||| | |||||||| || || |||| | | ||||| ||||| ||| || Sbjct 4627 GATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACAT 4686 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 ||||||||||| || || || |||||||||| ||||||| || ||||| | ||| Sbjct 4687 AGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCT 4746 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 65921 ||||| | || |||| ||| ||||| || ||| || || ||| || ||| | Sbjct 4747 TTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAA 4806 Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTC---TTTTCTCTTTCGTATAGTGTATACAAT 65978 || | || || || || ||| | || |||||| ||| ||| | ||| ||| Sbjct 4807 TCTTGCGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAAT 4863 Query 65979 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 66038 ||| || || || ||||| | || || |||||||||| |||||||| || Sbjct 4864 TTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAAT 4923 Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 | ||| | | | || || |||| ||||||||| | ||| || | ||||| ||| | Sbjct 4924 GTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAA 4983 Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 ||||||||||| | || ||| || || || ||| ||| | | ||| || ||| | Sbjct 4984 AATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCA 5043 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | ||||| ||||||| ||||| | |||| || | ||| | ||| ||| Sbjct 5044 AATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCA 5103 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATT 66277 || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| || || Sbjct 5104 CCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTT 5162 Query 66278 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG--CACGAATATTACTAATTGAT 66335 ||| ||||||| || || ||||| | ||| |||| |||| | || | Sbjct 5163 TGATATACCATTTGTTCCTCTTATATA--TGAATTTTGTCCACGTATATCTTGTACTGCT 5220 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| || || ||||| ||||| || || || ||| | ||||| || ||| | || Sbjct 5221 ACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATT 5280 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455 || || || ||| | |||| |||| |||||| ||||| || | | Sbjct 5281 CCTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGT 5340 Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || | ||||||||| || || | || || ||||| |||||| || | |||| Sbjct 5341 GTCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGA 5400 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || || | ||| |||| ||| | ||| || || | || || | ||||| | Sbjct 5401 TATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATC 5460 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 | || || |||||||| | || || || || || ||| || || || |||| || Sbjct 5461 AAATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAAC 5520 Query 66636 GTTTTAAAACCAAAATA 66652 ||||||||||||||||| Sbjct 5521 GTTTTAAAACCAAAATA 5537 >seq1322 Length=3124 Score = 224 bits (248), Expect = 1e-53 Identities = 605/909 (67%), Gaps = 26/909 (3%) Strand=Plus/Minus Query 35848 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 35907 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 2954 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 2895 Query 35908 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttttt 35967 |||| || || || ||||| ||| || ||||| | ||| | |||||||| Sbjct 2894 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGA 2835 Query 35968 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 36024 | | || || ||| ||| |||| |||||| |||||||||||||| ||| | Sbjct 2834 ACAACCTAAACATTCC--AAT-AATCGATCTGCTACAAATTCTATATACTGAGACATTAA 2778 Query 36025 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAAT-TCTTGTTC 36081 | ||||||| || || | | | || |||| |||| || |||| |||| || Sbjct 2777 TCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACA-TATGAAAGATCTT--TC 2721 Query 36082 AATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATAC---AA 36138 || || || ||| | | |||| | | || |||||| | || || Sbjct 2720 AACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAA 2661 Query 36139 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 36198 |||| || | || ||||| ||||| |||| || || ||||||||||||| Sbjct 2660 TAAAC---TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAG 2604 Query 36199 TTCGTTGGAAAACGTGAGTCCGGGCA--TTAGGCCACGCTTTTTAAGCCAAAATATGGAC 36256 ||| || ||| || ||||| | | ||| | | ||||||| |||||| || | | Sbjct 2603 TTCATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATTG-C 2547 Query 36257 GCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 36315 |||| | ||| ||| | || ||||| || ||| || | || ||| ||| | Sbjct 2546 ACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGC 2487 Query 36316 ATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 | | | |||| |||||| ||| ||||||| || || || || || || Sbjct 2486 AAATGAATTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGG 2427 Query 36376 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 36435 || | || ||||||| ||| | || ||| ||| |||||| | ||| |||| Sbjct 2426 TATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATC 2367 Query 36436 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 ||| | | ||| ||| |||| ||||| |||||||| | || ||||||||| ||| || Sbjct 2366 AATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAA 2307 Query 36496 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCA 36554 | |||| || ||||| || |||||| | |||| | | || || |||||||| | Sbjct 2306 TTTTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATA 2248 Query 36555 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTG 36614 |||| || ||||| ||||||||||| || || |||||||| ||||||| |||||| ||| Sbjct 2247 CTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTT 2188 Query 36615 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 36674 ||| ||| | |||| || | ||| | |||| ||| | |||||| ||||||||| Sbjct 2187 CATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAA 2128 Query 36675 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 36734 ||||||| ||||| |||||||| | || ||| | || | ||| ||||||| | | Sbjct 2127 ATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGGATACAATG 2068 Query 36735 CAAATCTAT 36743 |||||||| Sbjct 2067 TAAATCTAT 2059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658139685681000