Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1322 253 2e-62 >seq1322 Length=3124 Score = 253 bits (280), Expect = 2e-62 Identities = 620/925 (67%), Gaps = 21/925 (2%) Strand=Plus/Minus Query 13543 AAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTT 13602 ||||||| | ||| | | | | || ||||| || ||| ||||| ||| ||| | || Sbjct 2973 AAAAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTT 2914 Query 13603 TTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTA 13662 ||||||| ||||| ||||| |||| || || || ||||| ||| ||| |||||| Sbjct 2913 TTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTT 2854 Query 13663 TTGACATAAACACTTTATCA-CAACCTAG---TTCTAATAGTAATCTATCAGCAATAAAC 13718 ||| |||||| | ||| | | ||||||| ||| |||| ||| ||| || | ||| Sbjct 2853 TTG-CATAAAAAATTTTTGAACAACCTAAACATTCCAATA---ATCGATCTGCTACAAAT 2798 Query 13719 TCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTG 13778 || ||||| ||||||||||| ||||||| || |||| | ||| | | ||| Sbjct 2797 TCTATATACTGAGACATTAATCTTGAATTCATCCCAATTAAATCACAAGGTAG-AGATTC 2739 Query 13779 GT-TAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATT 13837 || || | |||| | ||||| ||||| | |||| || ||| || || | Sbjct 2738 ACATATGAAAGATCTTTCAACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTC 2679 Query 13838 AGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAATCACAATGAAGGCCC 13895 | | | |||||| | || | |||||||| |||||| ||| | || Sbjct 2678 TG--GTAATTTATTTTCTAATAAACTATATATTAAACAATTAAAATCTGTATGTAATCCT 2621 Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAATCCTCGtttttt 13954 |||||||||||||| ||||| || ||| || | ||| || || || || ||||||| Sbjct 2620 TCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTCT-GTTTTTT 2562 Query 13955 tAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 |||||||| |||||| ||| || ||| | ||| || ||||| ||| || Sbjct 2561 AAACCAAAAAATTGCACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGC 2502 Query 14015 TATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGA 14074 || | || |||| |||| || | | | || |||||||||| |||||| | Sbjct 2501 TACAATTCTTTCTGCAAATGAATTTGTATCATT---TATCCATTTTGCAGCCCAAAGTGC 2445 Query 14075 tttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGT 14134 ||| || |||| || |||||||||||| |||||||| | |||||| Sbjct 2444 TTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATC 2385 Query 14135 ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGC 14194 | | || || ||||||||||||| || ||| |||| || ||||||||||| | || Sbjct 2384 ATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGC 2325 Query 14195 TATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTC 14254 ||| ||||| ||||| | ||||||| | ||| ||||| ||||| ||| | Sbjct 2324 TATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCT-TAAAAACTTAC 2266 Query 14255 G-GCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAA 14313 ||||||||||| ||||||||||||||||||||||||||||| || | | ||||| Sbjct 2265 TAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAA 2206 Query 14314 TAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTA 14373 |||| | || || | | || | ||||| |||| |||||| | || | ||||| Sbjct 2205 TAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTA 2146 Query 14374 CTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTAT 14433 ||| ||| |||||||||| || | ||||||||||| | |||| | ||| | Sbjct 2145 TTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGT 2086 Query 14434 ATAATATAGGAAAAACTACAAATCT 14458 |||| || ||| | | | |||||| Sbjct 2085 ATAAAATTGGATACAATGTAAATCT 2061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479703863685000