Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1322 241 1e-58 >seq1322 Length=3124 Score = 241 bits (266), Expect = 1e-58 Identities = 616/924 (67%), Gaps = 19/924 (2%) Strand=Plus/Minus Query 13331 AAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTT 13390 ||||||| | ||| | | | | || ||||| || ||| ||||| ||| ||| | || Sbjct 2973 AAAAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTT 2914 Query 13391 TTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTG 13450 ||||||||||||| ||||| |||| || || || ||||| ||| || |||||| Sbjct 2913 TTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTT 2854 Query 13451 TTGACATAAACACTTTATCA-CAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCA 13509 ||| |||||| | ||| | | ||||||| | ||||||| ||| || | ||| || Sbjct 2853 TTG-CATAAAAAATTTTTGAACAACCTAAACATTCCAATAATCGATCTGCTACAAATTCT 2795 Query 13510 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATT-AGT 13568 ||||| ||||||||||| ||||||| || |||| | ||| | | ||| | Sbjct 2794 ATATACTGAGACATTAATCTTGAATTCATCCCAATTAAATCACAAGGTAG-AGATTCACA 2736 Query 13569 TAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGA 13628 || || | |||| | ||||| || || | |||| | |||| || || | | Sbjct 2735 TATGAAAGATCTTTCAACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTG- 2677 Query 13629 AGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCA 13686 | | |||||| | || | |||||||| |||||| ||| | || ||| Sbjct 2676 -GTAATTTATTTTCTAATAAACTATATATTAAACAATTAAAATCTGTATGTAATCCTTCA 2618 Query 13687 TCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAATCCTCGtttttttAA 13745 ||||||||||| ||||| || ||| || | ||| || || || || ||||||| || Sbjct 2617 TCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTCT-GTTTTTTAAA 2559 Query 13746 CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 13805 |||||| |||||| || || ||| | ||| || ||||| ||| |||| Sbjct 2558 CCAAAAAATTGCACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTAC 2499 Query 13806 TAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCCATTTTCTAGCCCATTCAGAt 13863 | || |||| |||| || ||||| | || ||||||||| |||||| | | Sbjct 2498 AATTCTTTCTGCAAATGAA-----TTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCT 2444 Query 13864 ttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTA 13923 || || |||| || |||| || |||| ||||||| | |||||| | Sbjct 2443 TTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCA 2384 Query 13924 CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCT 13983 | || || ||||||||||||| || ||| |||| || ||||||||||||| ||| Sbjct 2383 TCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCT 2324 Query 13984 ATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCT 14043 || ||||| ||||| | ||||||||| ||| || || ||||| ||| || Sbjct 2323 ATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCT-TAAAAACTTACT 2265 Query 14044 -GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAAT 14102 ||||| ||||| || |||||||||||||||||||||||||| || | | |||||| Sbjct 2264 AGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAAT 2205 Query 14103 AAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTAC 14162 ||| | || || | | || | ||||| |||| |||||| | || | ||||| Sbjct 2204 AAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTAT 2145 Query 14163 TTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATA 14222 ||| ||| |||||||||| || | ||||||||||| | |||| | ||| || Sbjct 2144 TTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTA 2085 Query 14223 TAATATAGGAAAAACTACAAATCT 14246 ||| || ||| | | | |||||| Sbjct 2084 TAAAATTGGATACAATGTAAATCT 2061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478564721001000