Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq700 376 3e-99 seq1322 203 4e-47 >seq700 Length=13977 Score = 376 bits (416), Expect = 3e-99 Identities = 1144/1756 (65%), Gaps = 42/1756 (2%) Strand=Plus/Plus Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 || || |||||||| |||| || |||||||| | ||||| |||| || |||||| Sbjct 3853 TGGTCAATGAAGGCACCCCGATCGGCAGCCATATCGATGATGTTCTTCTGCTTGATTTCC 3912 Query 71002 CAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 71057 |||| ||| || || | ||| ||||| || || | | || ||| ||| | Sbjct 3913 CAAACAGTCTTGTAGAGCTC-CTTAAGGTCGCTAGGTATTTCGCTTATATACTGGACACT 3971 Query 71058 TCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 71117 ||| | ||||||| | ||| || ||||||| ||| | | | || ||| Sbjct 3972 ACCATTGTGAGCAATAAGTTGTTGTTTCATGTCTTCATCCCAGAGTCCACGATCAAATAA 4031 Query 71118 AACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTA 71177 || |||| | ||||||||| || || ||||||||| | |||||| | | ||| Sbjct 4032 GTCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTA 4091 Query 71178 AATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 71237 |||||| || || |||||||| | || ||||| ||||| || || || | ||| ||||| Sbjct 4092 AATATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGC 4151 Query 71238 AGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTT 71297 ||| ||||||||||| | | || |||||| | |||||| | ||||| ||||| Sbjct 4152 AGTAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTT 4211 Query 71298 TAGAGATTC---CCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNN 71354 || ||| |||||||||| | || | |||| Sbjct 4212 AAG---TTCAGTCCAATTCCAATATTT--ATTAT-CAACCTTTATATTCCACATATCAAA 4265 Query 71355 N------ATGCCGTTACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 || || | ||||| | | | ||| |||| | || ||| || | ||| Sbjct 4266 TTGAAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTT 4324 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| ||| | | |||||||| ||||||| || ||||| ||||| | |||| Sbjct 4325 GAGCTAATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTAT 4384 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 | | |||| |||||| || | ||||| |||| || ||||| | || |||| Sbjct 4385 TTAATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTA 4444 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 ||||||| || ||||| || || ||||| ||||| | || || ||||||||||| || Sbjct 4445 ATCCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAA 4504 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 |||||||||||| | ||||||||||| | | |||||| || | ||| | | Sbjct 4505 CAGGATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTT 4564 Query 71648 CCTTTAGTTTGAGAAAATCAAA-----TCTCCCATCTAT-TACAAAC--ACGTTCAAGGC 71699 | | || ||| ||||| ||| | | | ||| |||||| || | || || Sbjct 4565 CATATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACAT--AAAGC 4622 Query 71700 AACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGT 71759 || |||||| | |||||||| || || |||| | | ||||| || |||||| Sbjct 4623 AATAGATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACA 4682 Query 71760 GCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 71819 || ||||||||||| || || || |||||||||| ||||||| || ||||| | Sbjct 4683 ACATAGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGA 4742 Query 71820 ATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 71879 ||| ||||| | ||| | || ||| ||||| || ||| || || ||| || ||| Sbjct 4743 ATCTTTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCA 4802 Query 71880 GACGACTCGAGCCTTTATTATATTCTTGTATCTC---TTTTCTCTTTCGTATTGTGTATA 71936 | || | || || || | | || | || |||||| ||| |||| | ||| Sbjct 4803 TAAATCTTGCGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATA 4859 Query 71937 TAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACAT 71996 |||| ||| || || || ||||| | | ||| || ||||||||||| |||||||| Sbjct 4860 TAATTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACAT 4919 Query 71997 CAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 |||| ||| | | || || || |||| ||||||||| | ||| || | ||||| ||| Sbjct 4920 TAATGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGC 4979 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 ||||| |||||| | || || || || || ||| ||| | | ||| || || Sbjct 4980 ATAAAATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAA 5039 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | | ||||| |||||||| ||||| | |||| || | ||| | ||| Sbjct 5040 CTCAAATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCC 5099 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATAC 72235 ||| || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| | Sbjct 5100 TCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-C 5158 Query 72236 CATTGGATGCACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTGCTAATT 72294 | || ||| |||||| || || ||||| | | | |||| |||| | | Sbjct 5159 CGTTTGATATACCATTTGTTCCTCTTATATATGAATTTTGTC-CACGTATATCTTGTACT 5217 Query 72295 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354 | || ||| || || ||||| ||||| || || || ||| | ||||| || ||| | Sbjct 5218 GCTACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAA 5277 Query 72355 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 72414 || || || || ||| | |||| |||| |||||| ||||| || | | Sbjct 5278 ATTCCTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTT 5337 Query 72415 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 72474 || || | ||||||||| || || | || || ||||| |||||| |||| ||| Sbjct 5338 GGTGTCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGA 5397 Query 72475 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATT 72534 | || || || | ||| ||||| ||| | |||||| || | | || | |||| Sbjct 5398 TGATATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATT 5457 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 | || ||| || |||||||| | || || ||||| || ||| || || || |||| Sbjct 5458 ATCAAATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCT 5517 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 72654 || ||||||||||||||||| | || ||| || ||| ||| ||| | ||| Sbjct 5518 AACGTTTTAAAACCAAAATAATCATAATTAAAATCACGTGTATAATCAATCTCTTTATTT 5577 Query 72655 AGTTTATCCTTATATT 72670 | | ||||||||| || Sbjct 5578 AATCTATCCTTATGTT 5593 >seq1322 Length=3124 Score = 203 bits (224), Expect = 4e-47 Identities = 590/892 (66%), Gaps = 26/892 (3%) Strand=Plus/Minus Query 41755 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTT 41814 || || |||||| || ||| || || ||| | ||||||||||| ||||| || || || Sbjct 2954 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 2895 Query 41815 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 41874 ||||| | || || ||||| ||| ||| ||||| | ||| | |||||||| Sbjct 2894 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGA 2835 Query 41875 AAATCCCAA---TTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCAT 41931 | | || || ||| ||| |||| |||||| | ||||||||||| ||| | Sbjct 2834 ACAACCTAAACATTCC--AAT-AATCGATCTGCTACAAATTCTATATACTGAGACATTAA 2778 Query 41932 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAAT-TCTTGTTC 41988 | ||||||| || || | | | || |||| |||| || |||| |||| || Sbjct 2777 TCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACA-TATGAAAGATCTT--TC 2721 Query 41989 AATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC---AA 42045 || || || ||| | | |||| | | || |||||| | || || Sbjct 2720 AACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAA 2661 Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105 |||| || | || ||||| ||||| || | || |||||||||||||||| Sbjct 2660 TAAAC---TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAG 2604 Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCA--TTAGGCCACGCTTTTTAAGCCAAAATATAGAC 42163 ||| || ||| || ||||| | | ||| | | ||||||| |||||| || | | Sbjct 2603 TTCATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATTG-C 2547 Query 42164 GCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 42222 |||| | ||| ||| | || ||||| || ||| || | || ||| ||| | Sbjct 2546 ACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGC 2487 Query 42223 ATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 | | | |||| |||||| ||| ||||||| || || || || || || Sbjct 2486 AAATGAATTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGG 2427 Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 || |||| || |||| ||| | || ||| ||| |||||| | ||| |||| Sbjct 2426 TATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATC 2367 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || | | ||| ||| |||||||||| |||||||| | || || |||||| ||| || Sbjct 2366 AATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAA 2307 Query 42403 ACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC-AGCTAAATTTTCGTTCA 42461 | | || || |||| || |||||| | |||| | | | ||| |||||||| | Sbjct 2306 TTTTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATA 2248 Query 42462 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCG 42521 |||| || ||||| ||||||||||| || || |||||||| ||||||| |||||| | Sbjct 2247 CTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTT 2188 Query 42522 GTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAA 42581 ||||||| | |||| || | ||| | |||| ||||| |||||| | ||||||| Sbjct 2187 CATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAA 2128 Query 42582 ATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGG 42633 ||||||||||||| |||||||| | || ||| | ||| | ||| |||||| Sbjct 2127 ATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGG 2076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671105433309000