Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq698 125 5e-24 seq147 93.3 3e-14 >seq698 Length=7480 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| ||| ||||| || | || || ||||| |||||||| ||||| | Sbjct 5634 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGAT 5693 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||| ||||| || || || |||| || | ||| || || |||| Sbjct 5694 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGA 5753 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315 |||||||| || || |||||| ||| ||| | || |||||||| | || ||| || Sbjct 5754 ATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATC-CGATGATTCAAC 5812 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| | ||| ||||| || ||||||| ||||| ||||| || ||||| Sbjct 5813 ATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 5860 >seq147 Length=23875 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 15164 AGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTG 15223 || ||||| ||||| || || || ||||| ||| | || | | |||||||||||| Sbjct 23204 AGAGTGGATTCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACATTCTAATTGTTTT 23263 Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT-CACAAATTTTGCT 15282 || || | || || | ||||| |||| |||||| |||| || | | || ||||||| Sbjct 23264 CCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCT 23323 Query 15283 CTTTACAATTTCTATGGTATCGCTATT--TTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || | | |||| || |||| ||| | ||| || || | || ||| ||||| || | Sbjct 23324 -TTAATATTTTCAATAGTAT--CTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTT 23380 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTG 15368 | ||||||||||| |||||||| |||| Sbjct 23381 AATGTTTTTACAAATATTTGCATTTTTG 23408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362161433412525