Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1322 235 5e-57 >seq1322 Length=3124 Score = 235 bits (260), Expect = 5e-57 Identities = 562/840 (67%), Gaps = 15/840 (2%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||| ||||| || ||| | |||||||||||||||||||||||||| || ||||| Sbjct 2936 TTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAA 2877 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| ||| ||||||||||| | | || | |||| ||| ||||| | || Sbjct 2876 ATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACCTAAACATTCCAA 2817 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 |||| || || ||||| ||||| ||||| |||||| | ||||| || ||||| Sbjct 2816 TAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAATTCATCCCAATTAA 2757 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||| | || ||| || || | |||| | ||||| ||||| |||| || Sbjct 2756 ATCACAAGGTAGAGATTCACATATGAAAGATCTTTCAACTTCAACAGCTTCTTTAACAAT 2697 Query 13099 GTCTCTTATTACGTTCTCT---AATGGAGGATTTGATAGATGCTTAAACATCATACATGC 13155 | | | | || | ||| ||| | | | ||| | || | || | ||| Sbjct 2696 ATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TATATATTAAACAATT 2640 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 |||||| || ||||||||||||||||| ||||| || || ||| || || || | Sbjct 2639 AAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATG 2580 Query 13216 CATAAGCCCTC-GTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 | | || ||||||||| |||||| || ||| ||| ||| ||| | ||| | Sbjct 2579 TA-ATTTATTCTGTTTTTTAAACCAAAAAATTGCACAAAAACTACCACTAAATAGTATAC 2521 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCC 13334 ||||||| |||| |||| | ||||| || | | | ||| || | ||||| Sbjct 2520 CTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAA---TTTGTATCATTTATCC 2464 Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGTTAAAT 13393 | ||| ||||| |||||| | ||||| || | | |||||||| || || | |||| Sbjct 2463 ATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGT-ATATTTTCAATAGCATGAAAT 2405 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 |||| ||| ||| ||| |||||| |||| || | ||| || ||| ||||| Sbjct 2404 AAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCT 2345 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 ||||| || ||||| | |||||||| || ||||| | |||| |||| | ||| Sbjct 2344 GAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGA 2285 Query 13514 ACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 ||||| ||||| ||| || || || ||||| ||||| || |||||||| ||||| Sbjct 2284 ACTTCTCT-TAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAA 2226 Query 13573 aaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGG 13632 ||| || | | || |||||||| | |||||| ||||| || ||| ||||| Sbjct 2225 AAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTT 2166 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 ||||| |||||||||||| || ||| | |||||||| || || | || || ||||| Sbjct 2165 TAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 2106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430961258293050