Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_006273.2 Length=235646 Score E Sequences producing significant alignments: (Bits) Value seq466 951 0.0 >seq466 Length=3970 Score = 951 bits (1054), Expect = 0.0 Identities = 559/588 (95%), Gaps = 0/588 (0%) Strand=Plus/Minus Query 175063 GAGCTCTGCTTATATAGACCTCCCATAGTAAACGCCTACCGCCCATTTGCGTCAATGGGG 175122 ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 1303 GAGCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATTTGCGTCAATGGGG 1244 Query 175123 CGGAGTTATTACGACATTTTGGAAAGTCCCGTTGAATTTGGTGCCAAAACAAACTNNNNN 175182 ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1243 CGGAGTTGTTACGACATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAACAAACTCCCAT 1184 Query 175183 NNNNNNNNNNNNNNNNNNGACTTGGAAATCCCCGTGAGTCAAACCGCTATCCACGCCCAT 175242 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1183 TGACGTCAATGGGGTGGAGACTTGGAAATCCCCGTGAGTCAAACCGCTATCCACGCCCAT 1124 Query 175243 TGATGTACTGCCAAAACCGCATCACCATGGTAATAGCGATGACTAATACGTAGATGTACT 175302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1123 TGATGTACTGCCAAAACCGCATCACCATGGTAATAGCGATGACTAATACGTAGATGTACT 1064 Query 175303 GCCAAGTAGGAAAGTCCCGTAAGGTCATGTACTGGGCATAATGCCAGGCGGGCCATTTAC 175362 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1063 GCCAAGTAGGAAAGTCCCATAAGGTCATGTACTGGGCATAATGCCAGGCGGGCCATTTAC 1004 Query 175363 CGTCATTGACGTCAATAGGGGGCGTACTTGGCATATGATACACTTGATGTACTGCCAAGT 175422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1003 CGTCATTGACGTCAATAGGGGGCGTACTTGGCATATGATACACTTGATGTACTGCCAAGT 944 Query 175423 GGGCAGTTTACCGTAAATACTCCACCCATTGACGTCAATGGAAAGTCCCTATTGGCGTTA 175482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 943 GGGCAGTTTACCGTAAATACTCCACCCATTGACGTCAATGGAAAGTCCCTATTGGCGTTA 884 Query 175483 CTATGGGAACATACGTCATTATTGACGTCAATGGGCGGGGGTCGTTGGGCGGTCAGCCAG 175542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 883 CTATGGGAACATACGTCATTATTGACGTCAATGGGCGGGGGTCGTTGGGCGGTCAGCCAG 824 Query 175543 GCGGGCCATTTACCGTAAGTTATGTAACGCGGAACTCCATATATGGGCTATGAACTAATG 175602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 823 GCGGGCCATTTACCGTAAGTTATGTAACGCGGAACTCCATATATGGGCTATGAACTAATG 764 Query 175603 ACCCCGTAATTGATTACTATTAATAACTAGTCAATAATCAATGTCAAC 175650 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 763 ACCCCGTAATTGATTACTATTAATAACTAGTCAATAATCAATGTCAAC 716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753901267434000