Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq698 145 7e-30 >seq698 Length=7480 Score = 145 bits (160), Expect = 7e-30 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||||||||| ||||| || || ||||| ||||||||||| || || | ||||||||| Sbjct 5632 CTCCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATC-- 5689 Query 94839 TCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| |||| ||| |||| || ||||| |||| |||||||||||||||||||| Sbjct 5690 TGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGG 5749 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||| ||||| || || | |||||| ||||| || | | || || | || Sbjct 5750 TGGAATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTC 5809 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | |||||||| ||||| || | ||||||||||| |||||||| Sbjct 5810 AACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 5860 Score = 141 bits (156), Expect = 8e-29 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||||||||| ||||| || || || || ||||||||||| || || | ||||||||| Sbjct 5863 CTCCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATC-- 5920 Query 94839 TCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| |||| |||||||| || ||||| |||| ||||||||||||||||| || Sbjct 5921 TGATAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGG 5980 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || ||||| || || | |||||| ||||| || | | || || | || Sbjct 5981 TGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTC 6040 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||||||||| ||||| || | ||||||||||| |||||||| Sbjct 6041 AACATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 6091 Score = 134 bits (148), Expect = 1e-26 Identities = 176/242 (73%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| | |||||||| ||||| || || ||||| ||||||||||| || || | Sbjct 5390 AAAAAATTAAAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGAT 5449 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||||||||| | ||| |||| ||| |||| || ||||| |||| ||||||||| Sbjct 5450 GTTATAATC--TGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTT 5507 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| || || || ||||| || || | |||||| ||||| || | | || Sbjct 5508 TGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTA 5567 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | |||||||| ||||| || | ||||||||||| |||||| Sbjct 5568 TCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGC 5627 Query 95006 AT 95007 || Sbjct 5628 AT 5629 Score = 114 bits (126), Expect = 1e-20 Identities = 120/156 (77%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||||||||| ||||| || || || || || |||||||||||||| | ||||||||| Sbjct 6094 CTCCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCA 6153 Query 94839 TCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 ||| |||| ||| |||| || ||||| |||| ||||||||||||||||| || Sbjct 6154 --ATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGG 6211 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 || || ||||| || || | |||||| ||||| || Sbjct 6212 TGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTAC 6247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448268645349000