Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1322 230 2e-55 >seq1322 Length=3124 Score = 230 bits (254), Expect = 2e-55 Identities = 572/859 (67%), Gaps = 25/859 (3%) Strand=Plus/Minus Query 21149 AAAACATTATCTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTT 21208 ||||| | ||| | | ||| | ||||| || ||| ||||||||| ||| | |||| Sbjct 2971 AAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTT 2912 Query 21209 TCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCA 21268 || ||||| ||||| ||||||| | || || | ||||| ||| ||| ||||||| Sbjct 2911 TCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTT 2852 Query 21269 GATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATA 21328 | | ||| ||||| |||||| | | ||||||| ||||||||||||||||||| Sbjct 2851 GCATAAAAAATTTTTGAACAACCTAAACATTCCAATAATCGATCTGCTACAAATTCTATA 2792 Query 21329 TATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAA 21388 || ||| |||||||| ||||||| || || || | ||| |||| || | Sbjct 2791 TACTGAGACATTAATCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATG 2732 Query 21389 AAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGG 21448 |||||| |||| | || ||||| || |||||| | | | | | | || || Sbjct 2731 AAAGATCTTTCAACTTCAACAGCTTCTTTAACAATATTTTTAA--CAACTTCTTCT--GG 2676 Query 21449 GGATACAAT----AATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATC 21504 || | | ||| || | || ||||| |||||| ||| || |||||||| Sbjct 2675 TAATTTATTTTCTAATAAACTATATATTAAACAATTAAAATCTGTATGTAATCCTTCATC 2616 Query 21505 CCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCA-TTAATCCTCTCTTTTTTAACC 21563 ||||| |||| ||||||| ||| || | || | | || || || | ||||| |||| Sbjct 2615 TCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTATTCTGT-TTTTTAAACC 2557 Query 21564 AAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACT 21622 |||| |||| | |||| || || ||| | || || ||||| ||| ||| || Sbjct 2556 AAAAAATTG-CACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACA 2498 Query 21623 AATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTT- 21681 | || ||| | ||| | | | |||| |||||||||| | ||||| ||| || Sbjct 2497 ATTCTTTCTGCAAATGAA---TTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTA 2441 Query 21682 TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATG---AtttttttCATCTAC 21738 ||||| | | | | | | |||||||| | || | || | || || ||| Sbjct 2440 TTCTTAACTGCTGGTATATTT-TCAATAGCATGAAATAAATTTAAACGTTCTTTATC--- 2385 Query 21739 ATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGC 21798 ||| |||| ||| ||| |||| |||||||| ||||||| || Sbjct 2384 ATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGC 2325 Query 21799 TATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTG 21858 ||| |||||| |||||| | | || |||| | |||||| || ||||| | | Sbjct 2324 TATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCT-TAAAAACTTAC 2266 Query 21859 -AGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTA 21917 |||||| ||||| |||||| |||||||| || ||||||||||| || | || ||| | Sbjct 2265 TAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAA 2206 Query 21918 TAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTA 21977 |||||| | ||| || || ||||||||| ||||| |||||| |||||||||||| Sbjct 2205 TAAAATGTTTTTCATTTTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTA 2146 Query 21978 CTTCTTCAGTTGTCCAAAA 21996 |||||||| ||||||||| Sbjct 2145 TTTCTTCAGCTGTCCAAAA 2127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531874038741000