Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq700 365 6e-96 seq1322 205 1e-47 >seq700 Length=13977 Score = 365 bits (404), Expect = 6e-96 Identities = 995/1516 (66%), Gaps = 33/1516 (2%) Strand=Plus/Plus Query 62314 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 62373 || |||| | ||| ||||| || || ||||||||| | |||||| | | ||||| Sbjct 4034 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4093 Query 62374 TATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 62433 |||| || || |||||||| | || ||||| ||||| || || || | ||| ||||||| Sbjct 4094 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4153 Query 62434 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62493 | ||||||||||| | | ||| |||||| | || | | || | ||||| ||||| | Sbjct 4154 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4213 Query 62494 GAGGTTC---CCAATTCCAAAG------ATCCGACGGTACAACNNNNNNNNNNNNNNNTT 62544 | ||| |||||||||| ||| | || | || Sbjct 4214 G---TTCAGTCCAATTCCAATATTTATTATCAACCTTTATA---TTCCACATATCAAATT 4267 Query 62545 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 62603 | |||||||| | || || | || | ||| |||| | || ||| || | | | | Sbjct 4268 GAAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTGA 4326 Query 62604 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62663 |||| ||| | | ||||||||| | ||||| || ||||| || || | |||||| Sbjct 4327 GCTAATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTT 4386 Query 62664 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62723 | |||| |||||| || | ||||| |||| || ||||| | || |||||| Sbjct 4387 AATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAAT 4446 Query 62724 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62783 ||||| |||||||| || || ||||||||||| | || || ||||||||||| || | Sbjct 4447 CCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACA 4506 Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62843 ||||||||||| | ||||||||||| | | |||||| ||| | ||| | || Sbjct 4507 GGATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCA 4566 Query 62844 TTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT---TACAAACATGTTCAAGGCAACA 62897 | | ||| ||||| ||| | ||| | |||||| | || |||| | Sbjct 4567 TATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATA 4626 Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 ||||| | |||||||| || || |||| | | ||||| ||||| ||| || Sbjct 4627 GATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACAT 4686 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 ||||||||||| || || || |||||||||| ||||||| || ||||| | ||| Sbjct 4687 AGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCT 4746 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 ||||| | || |||| ||| ||||| || ||| || || ||| || ||| | Sbjct 4747 TTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAA 4806 Query 63078 ACTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGTGTATACAAT 63134 || | || || || || ||| | || ||||| ||| ||| | ||| ||| Sbjct 4807 TCTTGCGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAAT 4863 Query 63135 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 63194 ||| || || || ||||| | || || |||||||||| |||||||| || Sbjct 4864 TTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAAT 4923 Query 63195 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 | ||| | | | || || |||| ||||||||| | ||| || | ||||| ||| | Sbjct 4924 GTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAA 4983 Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 |||| |||||| | || ||| || || || ||| ||| | | ||| || ||| | Sbjct 4984 AATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCA 5043 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | ||||| |||||||| ||||| | |||| || | ||| | ||| ||| Sbjct 5044 AATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCA 5103 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTT 63433 || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| ||||| Sbjct 5104 CCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTT 5162 Query 63434 TGATATACCATTGGTACCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATA 63492 |||||||||||| || || ||||| | | | |||| |||| | || || Sbjct 5163 TGATATACCATTTGTTCCTCTTATATATGAATTTTGT-CCACGTATATCTTGTACTGCTA 5221 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATAC 63552 ||| || || ||||| ||||| || || || ||| | ||||| || ||| | || | Sbjct 5222 CACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATTC 5281 Query 63553 CCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63612 | || || ||| | |||| |||| |||||| ||||| || | | | Sbjct 5282 CTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGTG 5341 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 | || | ||||||||| || || | || || ||||| |||||| || | |||| | Sbjct 5342 TCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGAT 5401 Query 63673 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 | || || | ||| |||| ||| | ||| || || | || || | ||||| || Sbjct 5402 ATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATCA 5461 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 || || |||||||| | || || || || || ||| || || || |||| || | Sbjct 5462 AATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAACG 5521 Query 63793 TTTTAAAACCAAAATA 63808 |||||||||||||||| Sbjct 5522 TTTTAAAACCAAAATA 5537 >seq1322 Length=3124 Score = 205 bits (226), Expect = 1e-47 Identities = 569/860 (66%), Gaps = 22/860 (3%) Strand=Plus/Minus Query 32994 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 33053 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 2954 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 2895 Query 33054 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 33113 ||||| | || || ||||| ||| ||| ||||| | ||| | |||||||| Sbjct 2894 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGA 2835 Query 33114 AAATCCCAA---TTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCAT 33170 | | || || ||| ||| |||| ||| || || ||||||||||| ||| | Sbjct 2834 ACAACCTAAACATTCC--AAT-AATCGATCTGCTACAAATTCTATATACTGAGACATTAA 2778 Query 33171 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAG-TAAGAAAT-TCTTGTTCA 33228 | ||||||| || || | | | || |||| || || |||| |||| ||| Sbjct 2777 TCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTT--TCA 2720 Query 33229 ATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGC---AAT 33285 | || || ||| | | |||| | |||| |||||| | || ||| Sbjct 2719 ACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAAT 2660 Query 33286 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGT 33345 ||| || | || ||||| ||||| || | || || ||||||||||||||| Sbjct 2659 AAAC---TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGT 2603 Query 33346 TCGTTGGAAAACGTGAGTCCGGGCA--TTAGGCCACGCTTTTTAAGCCAAAATATGGAAG 33403 || || ||| || ||||| | | ||| | | ||||||| |||||| || | | Sbjct 2602 TCATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATTGCAC 2545 Query 33404 CGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCAT 33463 || ||| ||| | || ||||| || ||| || | || ||| ||| || Sbjct 2544 AAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAA 2485 Query 33464 AACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 33523 | | |||| |||||| ||| ||||||| || || || || || || | Sbjct 2484 ATGAATTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTA 2425 Query 33524 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGA 33583 | |||| || |||| ||| | || ||| ||| |||||| | |||| |||| | Sbjct 2424 TATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAA 2365 Query 33584 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 33643 | | | ||| ||| |||| ||||| |||||||| | || || |||||| ||| || Sbjct 2364 TAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATT 2305 Query 33644 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACT 33702 | |||| || ||||| || |||||| | |||| | | | ||||||||||| ||| Sbjct 2304 TTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACT 2246 Query 33703 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33762 || || ||||| ||||||||||| || || |||||||| ||||||| |||||| | | Sbjct 2245 ATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCA 2186 Query 33763 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 ||| ||| | |||| || | ||| | |||| ||||| |||||| ||||||||||| Sbjct 2185 TTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAAT 2126 Query 33823 GATGCCTCTGCCTTTTTATA 33842 ||||| ||||| |||||||| Sbjct 2125 GATGCTTCTGCTTTTTTATA 2106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622915857969000