Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq698 114 1e-20 seq700 104 2e-17 >seq698 Length=7480 Score = 114 bits (126), Expect = 1e-20 Identities = 169/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| || || ||||| | || ||| |||| || || | Sbjct 5630 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 5571 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| ||| | || || || ||| || || ||||| ||||| |||||||| Sbjct 5570 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 5511 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 || ||| | || | | || |||||| | ||||||| |||| | | | | ||||||| Sbjct 5510 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAA-CATTATCAGATTATA 5452 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAAT 24225 |||| || ||||||||||| | || ||||| ||| |||| |||||||| | |||| Sbjct 5451 ACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGTTTTTAAT 5395 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| || || ||||| | || || |||| || || | Sbjct 6092 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATC 6033 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| ||| | || || || ||| || || ||||| ||||| |||||||| Sbjct 6032 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 5973 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 || ||| | || | | || |||||| | || |||| |||| | | | | ||||||| Sbjct 5972 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAA-CATTATCAGATTATA 5914 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| || ||||||||||| | |||||||| ||| |||| ||||||||| Sbjct 5913 ACATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGGA 5864 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| || || ||||| | || ||| |||| || || | Sbjct 5861 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 5802 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| ||| | || || || ||| || || ||||| || || || ||||| Sbjct 5801 GGATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 5742 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 || ||| | || | | || |||||| | ||||||| |||| | | | | ||||||| Sbjct 5741 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAA-CATTATCAGATTATA 5683 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| || ||||||||||| | || ||||| ||| |||| ||||||||| Sbjct 5682 ACATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGA 5633 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAG 24077 |||||| |||| ||| | || || ||| | || ||||| ||| | || || || Sbjct 6295 GGAAAAACGATCACCTTGGATGTTGAGTCATCGGATACCATTGAGAATGTAAAGGCGAAA 6236 Query 24078 ATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAA 24137 ||| || || ||||| ||||| |||||||| || ||| | || | | || |||||| Sbjct 6235 ATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAGCAA 6176 Query 24138 CTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTA 24197 | ||||||| |||| | ||||||||||| ||||| |||||||| | |||||| Sbjct 6175 TTGGAAGATGGAAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTTACATTTA 6116 Query 24198 GTGTTAAGATTGAGAGGAGGA 24218 || ||| |||| ||||||||| Sbjct 6115 GTCTTACGATTAAGAGGAGGA 6095 >seq700 Length=13977 Score = 104 bits (114), Expect = 2e-17 Identities = 187/270 (69%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 133008 TTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAG 133067 |||| |||||| ||||||||||| || | || | ||||| ||||| || | | Sbjct 4853 TTTCATATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTG 4912 Query 133068 GACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCC 133127 ||||||| |||| ||| |||| | | | || |||||||| ||||| ||| || Sbjct 4913 GACACATTAATGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCC 4972 Query 133128 ACATGGCAAAAAATAAATCGCGAGC-CTTCATATCTTCCGCGCCCATATTTCGTTTCAAG 133186 | | ||| |||||||||| | ||| | | || ||||| || |||| | |||| Sbjct 4973 AAACAGCATAAAATAAATCTCTAGCTCGTAAT-TCTTCTTTACCATGATTTTTTCTCAAA 5031 Query 133187 TCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTC 133246 || | ||| ||| || |||| |||||| || || |||||||| || || | ||||| Sbjct 5032 TCTAGAAACTCAAATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTT 5091 Query 133247 CTTTTACCT---CCCTGATCCACATGTCTA 133273 ||||| ||| || ||||| |||| |||| Sbjct 5092 CTTTTTCCTCCACCTTGATCTACATATCTA 5121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429914909623875