Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq698 100 2e-16 seq147 89.7 4e-13 >seq698 Length=7480 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| ||||| | || ||||| ||||| ||| |||| || || Sbjct 5630 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 5571 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | ||||| |||||| ||||| ||||| | || ||||| Sbjct 5570 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 5511 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | || | ||| || || ||||| ||||||| | ||| | | |||||||| Sbjct 5510 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 5451 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || ||||| |||||| |||| | || || |||| ||||||| Sbjct 5450 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 5403 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| ||||| | || ||||| ||||| ||| |||| || || Sbjct 5861 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 5802 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | || || |||||| ||||| ||||| | || ||||| Sbjct 5801 GGATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 5742 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | || | ||| || || ||||| ||||||| | ||| | | |||||||| Sbjct 5741 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 5682 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 ||| || ||||| |||||| |||| | || || |||| |||||||| Sbjct 5681 CATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGA 5633 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| ||||| | || ||||| ||||| || |||| || || Sbjct 6092 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATC 6033 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | ||||| |||||| ||||| ||||| | || ||||| Sbjct 6032 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 5973 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | || | ||| || || ||||| || |||| | ||| | | |||||||| Sbjct 5972 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAA 5913 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 ||| || ||||| |||||| ||||| | || || |||| |||||||| Sbjct 5912 CATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGGA 5864 >seq147 Length=23875 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 |||||||||||| ||||| ||||| | | ||||||||| ||| || | || || || Sbjct 23407 AAAAATGCAAATATTTGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATC 23348 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || ||| ||| | | | ||| ||||||| ||||| |||| | ||| | || Sbjct 23347 AGTAGATACTATTGAAAATATTAAAGCAAAAATTCAGGATAAGGAAGTAATTCCCCTCGA 23288 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 | |||||| | |||| ||| || |||||||||||| || ||||| | ||||| Sbjct 23287 CGAACAAAGATTAATTTTTGCAGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATTA 23228 Query 115462 TAACATTCAAAAAGAGTCTACT 115483 ||| || || ||||| || ||| Sbjct 23227 TAATATCCAGAAAGAATCCACT 23206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425323134883000