Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq125 127 1e-24 seq124 127 1e-24 seq698 104 2e-17 seq2646 89.7 3e-13 seq147 84.2 1e-11 >seq125 Length=94411 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 1689 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 1748 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1749 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1783 >seq124 Length=5941 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 3179 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 3120 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3119 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3085 >seq698 Length=7480 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| || || || || ||||| | ||| || || || || || ||||| || Sbjct 5865 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 5924 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || | | | || || ||||| ||||| |||||||||| | ||| ||||||| || Sbjct 5925 AATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 5984 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| || || |||||| ||| ||||||| | ||||| |||||| Sbjct 5985 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACA 6044 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||||||||||||| ||||||||||| Sbjct 6045 TCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 6091 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| ||||| || || || || || || | ||| || || || || || ||||| || Sbjct 5402 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGA 5461 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | | | || || ||||| ||||| |||||||||| | ||| ||||||| || Sbjct 5462 TAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 5521 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| || || |||||| ||| ||||||| | ||||| |||||| Sbjct 5522 TATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAAC 5581 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||||||||||||| ||||||||||| Sbjct 5582 ATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 5629 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| || || || || || || | ||| || || || || || ||||| || Sbjct 5634 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGAT 5693 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || | | | || || ||||| ||||| |||||||||| | ||| ||||| | || Sbjct 5694 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGA 5753 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| || || |||||| ||| ||||||| | ||||| |||||| Sbjct 5754 ATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACA 5813 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||||||||||||| ||||||||||| Sbjct 5814 TCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 5860 >seq2646 Length=23038 Score = 89.7 bits (98), Expect = 3e-13 Identities = 78/96 (81%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| |||||| |||||||||||||||||| | ||||| || |||||| | Sbjct 9756 AAGCCCGTTTCCTTGGTTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCTT 9697 Query 25957 TAATCCTTTCATGC-GCGTCACTAATTAGATGACGA 25991 ||||| ||||||| |||||| ||||| ||||||| Sbjct 9696 TAATCTGTTCATGCATCGTCACAAATTAAATGACGA 9661 >seq147 Length=23875 Score = 84.2 bits (92), Expect = 1e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 |||||||||||||| ||||| |||| | ||||| ||| ||| | |||| || ||| Sbjct 23252 TCTAATTGTTTTCCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCC 23311 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 ||||||| || | ||| | | ||||||| | |||||| || | | ||| ||| Sbjct 23312 TGAATTTTTGCTTTAATATTTTCAATAGTATCTACTGATTCAACCTCAAGGGCAATTGTT 23371 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || ||| | || ||||| || ||||| ||||| ||| Sbjct 23372 TTTCCCCTTAATGTTTTTACAAATATTTGCATTTTT 23407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334930769269775