Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq700 356 3e-93 seq1322 221 2e-52 >seq700 Length=13977 Score = 356 bits (394), Expect = 3e-93 Identities = 996/1520 (66%), Gaps = 41/1520 (3%) Strand=Plus/Plus Query 62169 CTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 62228 || |||| | ||| ||||| || || ||||||||| | |||||| | | ||||| Sbjct 4034 CTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAA 4093 Query 62229 TATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 62288 |||| || || |||||||| | ||| ||||| ||||| || || || | ||| ||||||| Sbjct 4094 TATTGCTAGTGTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAG 4153 Query 62289 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62348 | ||||||||||| | | ||| |||||| | || | | || | ||||| ||||| | Sbjct 4154 TAGGCATAGGTGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAA 4213 Query 62349 GAGGTTC---CCAATTCCAAAG------ATCCGACGGTACAACNNNNNNNNNNNNNNNTT 62399 | ||| |||||||||| ||| | || | || Sbjct 4214 G---TTCAGTCCAATTCCAATATTTATTATCAACCTTTATA---TTCCACATATCAAATT 4267 Query 62400 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 62458 | |||||||| | || || | || | ||| |||| | || ||| || | | | | Sbjct 4268 GAAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTGA 4326 Query 62459 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62518 |||| ||| | | ||||||||| | ||||| || ||||| || || | |||||| Sbjct 4327 GCTAATTCCATAGACATTTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTT 4386 Query 62519 AGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 62578 | |||| ||||| || | ||||| |||| || ||||| | || |||||| Sbjct 4387 AATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAAT 4446 Query 62579 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62638 ||||| |||||||| || || ||||||||||| | || || ||||||||||| || | Sbjct 4447 CCTTGTACACCAATTCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACA 4506 Query 62639 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62698 ||||||||||| | ||||||||||| | | |||||| ||| | ||| | || Sbjct 4507 GGATAATAATTTCTTTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCA 4566 Query 62699 TTCAGTTTGAGAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAATGCAACA 62752 | | ||| ||||| ||| | | ||| |||||| | || |||| | Sbjct 4567 TATAATTTTTTAAAATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATA 4626 Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 ||||| | |||||||| || || |||| | | ||||| ||||| ||| || Sbjct 4627 GATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACAT 4686 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 ||||||||||| || || || |||||||||| ||||||| || ||||| | ||| Sbjct 4687 AGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCT 4746 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932 ||||| | || |||| ||| ||||| || ||| || || ||| || ||| | Sbjct 4747 TTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAA 4806 Query 62933 ACTCGAGCCTTTATTATAGATTTGTATCTC---TTTTCTCTTTCGTATAGTGTATACAAT 62989 || | || || || || ||| | || |||||| ||| ||| | ||| ||| Sbjct 4807 TCTTGCGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAAT 4863 Query 62990 CGTTCGAACTCGTCTCCCCAAACATTGTCCAGT----CCAGGACATTCATCCGGACACAT 63045 ||| || || || ||||| | | || | || |||||||||| |||||||| Sbjct 4864 TTTTCAAATTCTTCACCCCA----TGTTTCACTTAAACCTGGACATTCATTTGGACACAT 4919 Query 63046 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63105 || | ||| | | | || || |||| ||||||||| | ||| || | ||||| ||| Sbjct 4920 TAATGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGC 4979 Query 63106 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63165 ||||| |||||| | || ||| || || || ||| ||| | | ||| || || Sbjct 4980 ATAAAATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAA 5039 Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225 | | | ||||| |||||||| ||||| | |||| || | ||| | ||| Sbjct 5040 CTCAAATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCC 5099 Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATAC 63284 ||| || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| | Sbjct 5100 TCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-C 5158 Query 63285 CATTGGATGTACCATTGGTCCCTGAGATATA-GCTTCCACTGGCACGAATATTACTAATT 63343 | || ||| ||||||| || ||| ||||| | | | |||| |||| | | Sbjct 5159 CGTTTGATATACCATTTGTTCCTCTTATATATGAATTTTGTC-CACGTATATCTTGTACT 5217 Query 63344 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 63403 | || ||| || || ||||| ||||| || || || ||| | ||||| || ||| | Sbjct 5218 GCTACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAA 5277 Query 63404 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63463 || || || || ||| | |||| |||| |||||| ||||| || | | Sbjct 5278 ATTCCTTCAATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTT 5337 Query 63464 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGA 63523 || || | ||||||||| || || | || || ||||| |||||| || | ||| Sbjct 5338 GGTGTCCCTGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGA 5397 Query 63524 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63583 | || || || | ||| |||| ||| | ||| || || | || || | |||| Sbjct 5398 TGATATGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATT 5457 Query 63584 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63643 | || || || |||||||| | || || || || || ||| || || || |||| Sbjct 5458 ATCAAATGTTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCT 5517 Query 63644 AAAGTTTTAAAACCAAAATA 63663 || ||||||||||||||||| Sbjct 5518 AACGTTTTAAAACCAAAATA 5537 >seq1322 Length=3124 Score = 221 bits (244), Expect = 2e-52 Identities = 604/909 (66%), Gaps = 26/909 (3%) Strand=Plus/Minus Query 32351 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 32410 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 2954 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 2895 Query 32411 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAttttttt 32470 |||| || || || ||||| ||| || ||||| | ||| | |||||||| Sbjct 2894 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGA 2835 Query 32471 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 32527 | | || || ||| ||| |||| |||||| |||||||||||||| ||| | Sbjct 2834 ACAACCTAAACATTCC--AAT-AATCGATCTGCTACAAATTCTATATACTGAGACATTAA 2778 Query 32528 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAAT-TCTTGTTC 32584 | ||||||| || || | | | || |||| |||| || |||| |||| || Sbjct 2777 TCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCACA-TATGAAAGATCTT--TC 2721 Query 32585 AATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC---AA 32641 || || || ||| | | |||| | | || |||||| | || || Sbjct 2720 AACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAA 2661 Query 32642 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 32701 |||| || | || ||||| ||||| |||| || || ||||||||||||| Sbjct 2660 TAAAC---TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAG 2604 Query 32702 TTCGTTGGAAAACGTGAGTCCGGGCA--TTAGGCCACGCTTTTTAAGCCAAAATATGGAC 32759 ||| || ||| || ||||| | | ||| | | ||||||| |||||| || | | Sbjct 2603 TTCATTACTAAAAGTAAGTCCATGTAATTTATTCT--GTTTTTTAAACCAAAAAATTG-C 2547 Query 32760 GCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 32818 |||| | ||| ||| | || ||||| || ||| || | || ||| ||| | Sbjct 2546 ACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGC 2487 Query 32819 ATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 | | | |||| |||||| ||| ||||||| || || || || || || Sbjct 2486 AAATGAATTTGTATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGG 2427 Query 32879 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 32938 || | || ||||||| ||| | || ||| ||| |||||| | ||| |||| Sbjct 2426 TATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATC 2367 Query 32939 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 32998 ||| | | ||| ||| |||| ||||| |||||||| | || ||||||||| ||| || Sbjct 2366 AATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAA 2307 Query 32999 GCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCA 33057 | |||| || ||||| || |||||| | |||| | | || || |||||||| | Sbjct 2306 TTTTTTAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATA 2248 Query 33058 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 33117 |||| || ||||| ||||||||||| || || |||||||| ||||||| |||||| | | Sbjct 2247 CTATACCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTT 2188 Query 33118 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 33177 ||| ||| | |||| || | ||| | |||| ||| | |||||| ||||||||| Sbjct 2187 CATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAA 2128 Query 33178 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 33237 ||||||| ||||| |||||||| | || ||| | || | ||| ||||||| | | Sbjct 2127 ATGATGCTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGGATACAATG 2068 Query 33238 CAAATCTAT 33246 |||||||| Sbjct 2067 TAAATCTAT 2059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633600120390000