Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016-
06-16] 4,025 sequences; 34,518,662 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq698 105 6e-18
>seq698
Length=7480
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| |||||||| || || ||||| || || ||||||| |||| || || || ||
Sbjct 5861 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 5802
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || || ||| | ||| | |||| ||| || || ||||| |||||||| || |
Sbjct 5801 GGATACCATTGAGAATGTTAAGGCGAAAATTCAA-GATAAGGAAGGAATTCCACCAGATC 5743
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || | | || ||||| || || ||||| ||||||| | || | ||||| |
Sbjct 5742 AGCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATA 5683
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
| || || |||||||| || |||| ||||| || | |||||||||||
Sbjct 5682 ACATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGA 5633
Score = 102 bits (112), Expect = 7e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| |||||||| || || ||||| || || ||||||| |||| || || || ||
Sbjct 6092 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATC 6033
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || || ||| | ||| | |||| ||| || || ||||| || ||||| || |
Sbjct 6032 GGATACCATTGAGAATGTAAAGGCGAAAATTCAA-GATAAGGAAGGAATACCACCCGATC 5974
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || | | || ||||| || || ||||| || |||| | || | ||||| |
Sbjct 5973 AGCAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATA 5914
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
| || || |||||||| || |||||||||| || | |||||||||||
Sbjct 5913 ACATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGGA 5864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433306743230375
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |