Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1322 269 3e-67 >seq1322 Length=3124 Score = 269 bits (298), Expect = 3e-67 Identities = 601/888 (68%), Gaps = 27/888 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| |||| || || || |||| ||||||||| || ||||| ||||||| Sbjct 2948 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 2889 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | ||| || ||| || | | | | ||||| || || | | || | |||| | | | Sbjct 2888 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAA-ATTTTTGAACAAC 2830 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 | | | | | ||||||| ||| |||||||||||||| ||||||||||| || ||| Sbjct 2829 CTAAACATTCCAATAATCGATCTGCTACAAATTCTATATACTGAGACATTAATCTTGAAT 2770 Query 92967 TCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 |||| || | | | |||||||| || | |||| | | || | | |||| | Sbjct 2769 TCATCCCAATTAAATCACAAGGTAGAGATTCACATATGAAAGATCTTTCAACTTCAACAG 2710 Query 93027 CTTCTTT--CAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTA 93084 ||||||| ||| |||| || | || || | |||| ||| | | | | || | || Sbjct 2709 CTTCTTTAACAATATTTTTAACAA-CTTCT-TCTGGTAATTTATTTTCTAATAAACTATA 2652 Query 93085 CATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAA 93144 ||||| || ||| || |||||||| ||||| |||| || | ||||| || || Sbjct 2651 TATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAA 2592 Query 93145 TGTTAAACCTGGTAACAG-TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 || | || |||| | || |||| || | |||||| |||| | |||||||||| Sbjct 2591 AGTAAGTCCATGTAATTTATTCT-GTTTTTTAAACCAAAAAATTGCACAAAAACTACCAC 2533 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA---ATTTGCGG 93260 ||| | ||||||||| || |||| ||| ||||| | ||| ||||| ||||| Sbjct 2532 TAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGTAT 2473 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 ||| ||||||||| ||||||| ||||| ||||||| |||| ||| Sbjct 2472 CATTT------ATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTT 2419 Query 93321 CGATAGCGTTAAATAGGTAATCT---CGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 | ||||| | ||||| ||| | || || | |||| ||| || |||| || | Sbjct 2418 CAATAGCATGAAATA---AATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAA 2362 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 | | ||| |||| ||||| | || || | ||| ||||| ||| ||| || | Sbjct 2361 GTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTT 2302 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATA 93496 ||||||| || || || |||||| |||| || ||| | | |||||| |||||| Sbjct 2301 TAGCTTCTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATA 2243 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 ||||| ||||||||||| || || | ||| || ||||||||||| |||| || || Sbjct 2242 CCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTT 2183 Query 93557 AGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 | || || |||| || ||| |||| | ||| | |||||| | |||||||| ||| Sbjct 2182 AATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGAT 2123 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGA 93664 |||||||||||||| || | |||||| | ||| | ||| ||||||| Sbjct 2122 GCTTCTGCTTTTTTATAAAAATCCCAAACATCTGGGTATAAAATTGGA 2075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556832782941000