Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq698 132 4e-26 >seq698 Length=7480 Score = 132 bits (146), Expect = 4e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || || || |||| || || || ||| | | Sbjct 5629 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG 5570 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||||||||||| ||||| || || ||||||||||| Sbjct 5569 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 5510 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | |||||||| || || || || || ||| | || | || ||||| ||| Sbjct 5509 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAAC 5450 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCATTTT 22456 || || |||||||| || |||| ||||| || ||||| | ||||||||| ||||| Sbjct 5449 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGTTTTTAATTTT 5392 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || || || |||| || || || ||| | | Sbjct 6091 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATCG 6032 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||||||||||| ||||| || || ||||||||||| Sbjct 6031 GATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCAG 5972 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | |||||||| || || || || |||||| | || | || ||||| ||| Sbjct 5971 CAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAAC 5912 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||||| || |||||||||| || ||||| | ||||| Sbjct 5911 ATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGG 5865 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || || || |||| || || || ||| | | Sbjct 5860 ATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATCG 5801 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||||||||||| ||||| || |||||||| ||||| Sbjct 5800 GATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAG 5741 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | |||||||| || || || || || ||| | || | || ||||| ||| Sbjct 5740 CAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAAC 5681 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||||| || |||| ||||| || ||||| | ||||| Sbjct 5680 ATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 5634 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 || |||||| |||| | || || || | | |||||| | || || | || ||| Sbjct 6295 GGAAAAACGATCACCTTGGATGTTGAGTCATCGGATACCATTGAGAATGTAAAGGCGAAA 6236 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 |||||||| ||||| || || ||||||||||| ||| | | |||||||| || || || Sbjct 6235 ATTCAAGATAAGGAAGGAATACCACCCGATCAGCAAAGATTAATATTTGCAGGAAAGCAA 6176 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 || || ||| | || | | ||||| ||||| ||||| ||||| ||| |||||||| Sbjct 6175 TTGGAAGATGGAAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTTACATTTA 6116 Query 22426 GTTTTGCGATTGCGCGGAGG 22445 || || ||||| | ||||| Sbjct 6115 GTCTTACGATTAAGAGGAGG 6096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419707410374125