Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq698 114 3e-20 >seq698 Length=7480 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| ||||| || | | || | ||| ||||| ||||| |||||||| || Sbjct 5438 TTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAA 5497 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | || ||| ||| |||||||| ||||| || |||||||| || || || Sbjct 5498 TATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATT 5557 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||||| || ||||| ||||| ||||| || |||| || || || Sbjct 5558 CTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCAC 5617 Query 288462 GAATATCTGCATT 288474 |||||||||||| Sbjct 5618 AAATATCTGCATT 5630 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| ||||| || | | || | ||| || || ||||| |||||||| || Sbjct 5900 TTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAA 5959 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | || ||| ||| |||||||| ||||| || |||||||| || || || Sbjct 5960 TATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATT 6019 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||||| || ||||||||||| ||||| || |||| || || || Sbjct 6020 CTCAATGGTATCCGATGATTCAACATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCAC 6079 Query 288462 GAATATCTGCATT 288474 |||||||||||| Sbjct 6080 AAATATCTGCATT 6092 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || ||||| || | | || | ||| ||||| ||||| |||||||| || Sbjct 5669 TTCTTTCTGTATGTTATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAA 5728 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | || ||| ||| |||||||| ||||| || |||||||| || || || Sbjct 5729 TATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTAACATT 5788 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||||| || ||||| ||||| ||||| || |||| || || || Sbjct 5789 CTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCAC 5848 Query 288462 GAATATCTGCATT 288474 |||||||||||| Sbjct 5849 AAATATCTGCATT 5861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179593564853950