Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq698 87.8 2e-12 seq700 86.0 6e-12 >seq698 Length=7480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 64226 AATC-TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCG 64284 |||| |||| |||| || | || |||||||| || ||||| ||||||| | || | Sbjct 5643 AATCGTAAG-ACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCT 5701 Query 64285 CGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTC 64344 | ||||| | ||||| || ||| | || | | ||||| || || ||||||||||| Sbjct 5702 TCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTC 5761 Query 64345 TTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| ||||| ||| ||| ||| | ||||| | || || || | || Sbjct 5762 CTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACATCGAGGGT 5821 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | |||||| || ||||| ||||| || || || |||||| Sbjct 5822 GATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5861 >seq700 Length=13977 Score = 86.0 bits (94), Expect = 6e-12 Identities = 188/275 (68%), Gaps = 15/275 (5%) Strand=Plus/Plus Query 154806 TCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGAC--AAACCGGGAC 154863 ||||||| ||| || | ||||||||| ||| || || || || ||||| |||| Sbjct 4846 TCATATTTTTCATATAATTTTTCAAATTCTTCACCC--CATGTTTCACTTAAACCTGGAC 4903 Query 154864 AGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAAT 154923 | | |||||||| |||| ||| ||| |||| || || | |||||||||||||| Sbjct 4904 ATTCATTTGGACACATTAATGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAAT 4963 Query 154924 CCGGCACCCACAAAGCGTACAACAAATCAC--GCGCCT-TTTTGTCTTCAGCGCCCATG- 154979 | || ||||| | ||| || || ||||| | || | | || |||| | ||||| Sbjct 4964 CTGGTACCCAAACAGCATAAAATAAATCTCTAGCTCGTAATTCTTCTTTA----CCATGA 5019 Query 154980 TTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCC 155039 ||| | |||| | ||| ||| |||| || | ||||| || || | |||||| || Sbjct 5020 TTTTTTCTCAAATCTAGAAACTCAAATATATCTGAATGCCATGGTTCAATATATACTGCA 5079 Query 155040 ATCGCGCCTTTGCGTTTTCCT---CCTTGATCCAC 155071 | | ||||| | ||||||| |||||||| || Sbjct 5080 AATGATCCTTTTCTTTTTCCTCCACCTTGATCTAC 5114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499619661621000