Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq698 114 9e-21 seq147 89.7 4e-13 >seq698 Length=7480 Score = 114 bits (126), Expect = 9e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| ||| ||||| || | ||||| ||||| || ||||| ||||| || Sbjct 5403 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATC--TG 5460 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | ||||| ||||| || || || |||| || | || || ||| || Sbjct 5461 ATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTG 5520 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 | ||||||||||| || |||||| |||||| | || || ||||| | || ||| Sbjct 5521 GTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATC-CGATGATTCA 5579 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||| ||||| || ||||||| ||||| ||||| || ||||| Sbjct 5580 ACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 5629 Score = 114 bits (126), Expect = 9e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| ||| ||||| || | ||||| ||||| |||||||| ||||| || Sbjct 5634 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATC--TG 5691 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | ||||| ||||| || || || |||| || | || || || || Sbjct 5692 ATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTG 5751 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 ||||||||||||| || |||||| || ||| | || || ||||| | || ||| Sbjct 5752 GAATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATC-CGATGATTCA 5810 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||| ||||| || ||||||| ||||| ||||| || ||||| Sbjct 5811 ACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 5860 Score = 109 bits (120), Expect = 4e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| ||| |||||||| | ||||| ||||| || ||||| ||||| || Sbjct 5865 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATC--TG 5922 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | || || ||||| || || || |||| || | || || ||| || Sbjct 5923 ATAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTG 5982 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 | ||||||||||| || |||||| |||||| | || || ||||| | || ||| Sbjct 5983 GTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATC-CGATGATTCA 6041 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | || ||||| || ||||||| ||||| ||||| || ||||| Sbjct 6042 ACATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 6091 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| ||| |||||||| | |||||| || ||||| ||||| ||||| Sbjct 6096 CCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAAT 6155 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | |||| | ||||| ||||| || || || |||| || | || || ||| ||| Sbjct 6156 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 6215 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 ||||||||||| || |||||| |||||| | || || ||||| | || || || Sbjct 6216 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATC-CGATGACTCAAC 6274 Query 15129 GTCTAAGGTAATGGTTTTACCT 15150 || ||||| || ||||| ||| Sbjct 6275 ATCCAAGGTGATCGTTTTTCCT 6296 >seq147 Length=23875 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 14977 AGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTG 15036 || || || ||||| || || || ||||| | | | || | | |||||||||||| Sbjct 23204 AGAGTGGATTCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACATTCTAATTGTTTT 23263 Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 || || | || || | |||| |||| |||||| ||||||| || |||||| | Sbjct 23264 CCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCT 23323 Query 15097 TTTACAATTTCTATAGTATCGCTATT--TTCTACGTCTAAGGTAATGGTTTTACCTGTCA 15154 || | | |||| ||||||| ||| | ||| || || | || ||| ||||| || | | Sbjct 23324 TTAATATTTTCAATAGTAT--CTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTA 23381 Query 15155 GAGTTTTTACAAAAATTTGCATATTTG 15181 ||||||||||| |||||||| |||| Sbjct 23382 ATGTTTTTACAAATATTTGCATTTTTG 23408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357374468247125