Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq700 172 7e-38 >seq700 Length=13977 Score = 172 bits (190), Expect = 7e-38 Identities = 601/935 (64%), Gaps = 5/935 (1%) Strand=Plus/Minus Query 111896 TATTAGAGGTACAAATGGTCAATCAGATGGTATTATT-CCAATGCTTCGCGTATTTAACG 111954 ||| ||||| ||||||||| |||| | || |||| | |||||| | | || ||||||| Sbjct 5187 TATAAGAGGAACAAATGGTATATCAAACGG-ATTAGTACCAATGTTAAGAGTTTTTAACG 5129 Query 111955 CCACAGCGCGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCTATC 112011 ||||| | |||||| | |||| ||| | | || ||||| | ||||| ||| Sbjct 5128 ATACAGCTAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGATCATTTGCAGTATATA 5069 Query 112012 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATG 112071 |||| |||||||| | ||||| | ||||| || || ||| | || || ||| | | Sbjct 5068 TTGAACCATGGCATTCAGATATATTTGAGTTTCTAGATTTGAGAAAAAATCATGGTAAAG 5009 Query 112072 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 112131 | || || | ||| | || | ||| | ||| | |||||| | || ||||| | Sbjct 5008 AAGAATTACGAGCTAGAGATTTATTTTATGCTGTTTGGGTACCAGATTTGTTTATGAAAA 4949 Query 112132 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCG 112191 ||||| | || | | |||||| | | | |||||| | | || ||| | | Sbjct 4948 GAGTTAAAGAAAATAAAAATTGGACATTAATGTGTCCAAATGAATGTCCAGGTTTAAGTG 4889 Query 112192 ATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGA 112251 | | |||||| || |||||| | || ||| || || ||||||| | | | Sbjct 4888 AAACATGGGGTGAAGAATTTGAAAAATTATATGAAAAATATGAAGAAGAAAATTTAGGAA 4829 Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 || || ||| ||| | ||| |||||| | | ||||| || || | Sbjct 4828 AAAAAACTGTATTAGCGCAAGATTTATGGTTTGCTATTTTACAAAGTCAAATAGAAACAG 4769 Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371 || |||||||||| | || ||||| | ||||| || ||||||||| ||||| | Sbjct 4768 GTGTACCATATATGTTGTATAAAGATTCATGTAATGCTAAATCTAATCAAAAAAATTTAG 4709 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 112431 | || || || || || ||| ||||| | |||| |||| |||||| Sbjct 4708 GGACAATTAAATGTAGTAATCTATGTTGTGAAATAATCGAATATACATCACCAGATGAAG 4649 Query 112432 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 112491 ||||| |||||| | ||||| || ||| | || | ||| ||| |||| | ||| | Sbjct 4648 TTGCTGTTTGTAACTTAGCATCTATTGCTTTATGTAAATTTGTAGATACAGAAAAAAAAA 4589 Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 ||| ||| | ||||| | | ||| |||| |||| | | || | ||| || ||| | Sbjct 4588 TGTTTAATTTTAAAAAATTATATGAAATTACTAAAATTATTACGAGAAATTTAGACAAAA 4529 Query 112552 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 |||| || ||||||| ||| || ||| | ||| | ||| || | ||||| | | Sbjct 4528 TTATAGAAAGAAATTATTATCCTGTTAAAGAAGCTGAAAGATCAAACAGAAGACATAGAC 4469 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 112671 |||| || | ||||| ||||| | || ||| ||| || |||| | | | | | Sbjct 4468 CAATAGGAATTGGTGTACAAGGATTAGCTGATACATTTATGCTTTTAAGATATCCTTACG 4409 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 | || || ||||| || ||| | ||| | || ||||| || |||||| | || || Sbjct 4408 AATCAGATGAAGCAAAAGAATTAAATAAAAGAATTTTTGAAACTATGTATTATGCTGCAT 4349 Query 112732 TTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 | || | | ||| || || | || |||| ||||||| | | ||| ||| || Sbjct 4348 TAGAAATGTCTATGGAATTAGCTCAAATTTATGGGAAATATGAATCTTATGAAGGTAGTC 4289 Query 112792 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 112826 ||||| ||||| | |||||||||||||||||| Sbjct 4288 CAGCTAGCCAAGGTATTCTTCAATTTGATATGTGG 4254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620711168898000