Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq700 84.2 3e-11 >seq700 Length=13977 Score = 84.2 bits (92), Expect = 3e-11 Identities = 331/512 (65%), Gaps = 9/512 (2%) Strand=Plus/Plus Query 110713 ATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGACC--CGCCT 110770 ||||| || ||||||||||| | ||| || || | ||||| || | || | ||| Sbjct 5047 ATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCT 5106 Query 110771 GGTTA-ACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGAT 110829 | | ||||| | ||||| | || || || || | ||| || | | ||| | ||| Sbjct 5107 TGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAATCCGTTTGAT 5166 Query 110830 TGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGC-ATACC 110888 ||||||||| || || || || || | |||| || || || | ||| | ||| Sbjct 5167 ATACCATTTGTTCCTCTTATATATGAATTTTGTCCACGTATATCTTGTAC-TGCTACACC 5225 Query 110889 AATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATC 110948 ||||||||| || ||||| || ||||| | | | ||| || |||| || || Sbjct 5226 AATACCACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATTCCTTC 5285 Query 110949 AATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCC 111008 |||||||||||| || | | || ||| || || |||||||| || | || || || Sbjct 5286 AATCGAATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGTGTCCC 5345 Query 111009 CGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGT 111068 | ||| || | ||| ||||| ||||| | || ||| |||||| | ||||| Sbjct 5346 TGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATATGT 5405 Query 111069 GTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATA 111128 || | ||| || ||| | || |||||||| | |||| ||| | || || Sbjct 5406 TTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATCAAATG 5465 Query 111129 TTGAGGCGTTTCGATTAGCTTTCCATCAACACGC--TGAAGGTAACTCTTCTCTAGGGTC 111186 ||| || |||| || | || || || |||| | || | || ||| |||| || Sbjct 5466 TTGTGGTCTTTCTATAATTTTATTATTAATACGCAATAAATATGAC-CTT-TCTAACGTT 5523 Query 111187 TTGAGACCAAAGTATCCAAAATCGAAATCACG 111218 || | |||||| || || ||| |||||||| Sbjct 5524 TTAAAACCAAAATAATCATAATTAAAATCACG 5555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588946367145000