Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq698 145 2e-29 >seq698 Length=7480 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| | ||| || ||||| || || || ||||| | | ||||| |||||| Sbjct 5649 AAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGATAATGTTCTTCCATCT 5708 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||||| ||||| || || | || ||| || ||||| ||||| ||||| || ||| Sbjct 5709 TCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCT 5768 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || ||||||||||| ||||| ||| || || ||||| | ||| Sbjct 5769 TGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTC 5828 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||||||||| ||||| || || | |||||| Sbjct 5829 TTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5861 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| | ||| || ||||| || || || ||||| | | ||||| |||||| Sbjct 5418 AAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCT 5477 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||||| ||||| || || | || ||| || || || || || ||||| || ||| Sbjct 5478 TCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCT 5537 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || ||||||||||| ||||| ||| || || ||||| | ||| Sbjct 5538 TGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACATCGAGGGTGATGGTC 5597 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||||||||| ||||| || || | |||||| Sbjct 5598 TTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5630 Score = 125 bits (138), Expect = 2e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||| || || || ||||| | | ||||| ||||| || | ||||| || Sbjct 5894 AGTAGATTCTTTCTGGATGTTATAATCTGATAATGTTCTTCCATCCTCCAATTGCTTTCC 5953 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||| || || | || ||| || || || || || ||||| || ||||||||||| ||| Sbjct 5954 TGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTT 6013 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || ||||||||||| ||||| ||| || || || || | |||||||||||||| || Sbjct 6014 TACATTCTCAATGGTATCCGATGATTCAACATCGAGCGTGATGGTCTTTCCTGTCAAGGT 6073 Query 195123 TTTTACGAACACTTGCATT 195141 ||| || || | |||||| Sbjct 6074 TTTCACAAATATCTGCATT 6092 Score = 102 bits (112), Expect = 2e-16 Identities = 131/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGA--GTTCTCCCATCTTCGAGCTGCTTAC 195001 || || || ||||| || || ||||| ||| | ||||| |||||||| | ||||| | Sbjct 6126 GTAGATTCCTTTTGGATGTTATAATC--CAATAATGTTCTTCCATCTTCCAATTGCTTTC 6183 Query 195002 CTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCT 195061 |||| || || | || ||| || || || || || ||||| || ||||||||||| || Sbjct 6184 CTGCAAATATTAATCTTTGCTGATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCT 6243 Query 195062 TGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 | || ||||||||||| ||||| || || || | ||| | ||| |||||| | ||| Sbjct 6244 TTACATTCTCAATGGTATCCGATGACTCAACATCCAAGGTGATCGTTTTTCCTTTAAAA 6302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109424383687175