Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq700 569 2e-157 seq1322 302 5e-77 >seq700 Length=13977 Score = 569 bits (630), Expect = 2e-157 Identities = 1030/1507 (68%), Gaps = 35/1507 (2%) Strand=Plus/Plus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 ||||||||| |||| ||||||||| |||||||| | || ||||| || || Sbjct 4044 ATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTATAGTAAATATTGCTAGT 4103 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 || ||||| | ||||||||| ||||| || || || | ||| ||||| |||||||| | Sbjct 4104 GTACGGTTCAAAAGATTCATTGTTTCCTAATATCTGTGAAGTAGATGCAGTAGGCATAGG 4163 Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCA 47491 ||| | | ||| |||||||| ||||| ||||| ||| | |||| Sbjct 4164 TGCTAAAAGTAATGAATTTCTTAATCCATGTTTTTTTATTTTTTCTTTAAGTTCAGTCCA 4223 Query 47492 ATCCCAA-AGATCTGATGGAACA--ACATTCCAAAAATCATATTGAAGAATTCCTTTACT 47548 || |||| | | | || | | | |||||| | |||| |||||||||| |||| || Sbjct 4224 ATTCCAATATTTATTATCAACCTTTATATTCCACATATCAAATTGAAGAATACCTTGGCT 4283 Query 47549 TATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC-ACA-ACTT 47606 ||| ||| | ||| | || ||| || || | || ||| | ||| | | || | Sbjct 4284 AGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTGAGCTAATTCCATAGACAT 4343 Query 47607 GCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTT-GCTTC 47665 ||| |||||| |||||| || |||||||| ||| || | |||| |||| || ||||| Sbjct 4344 --TTCTAATGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTA-ATTCTTTTGCTTC 4400 Query 47666 TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAAT 47725 |||||| ||||||| |||||||| || |||||||| |||||||| Sbjct 4401 ATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTATCAGCTAATCCTTGTACACCAAT 4460 Query 47726 ACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTAT 47785 || ||||||||||| || | || || ||||||||| | ||||| | ||| | Sbjct 4461 TCCTATTGGTCTATGTCTTCTGTTTGATCTTTCAGCTTCTTTAACAGGATAATAATTTCT 4520 Query 47786 ATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAA 47845 ||||||||||| | || | |||||| |||||| ||||| Sbjct 4521 TTCTATAATTTTGTCTAAATTTCTCGTAATAATTTTAGTAATTTCATATAATTTTTTAAA 4580 Query 47846 ATCAAACTTGTTATTTA---TA---ACAAACCTATTAAGTGCTATAGATGCTAGATTACA 47899 || |||| | || ||| || ||||| || | || |||||||||| ||||| Sbjct 4581 ATTAAACATTTTTTTTTCTGTATCTACAAATTTACATAAAGCAATAGATGCTAAGTTACA 4640 Query 47900 TACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTT 47959 ||||| || |||| ||| ||||||| ||||||||| ||||||||||| |||||| Sbjct 4641 AACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCACAACATAGATTACTACATTT 4700 Query 47960 GATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAA 48019 || || || ||||||| |||||| ||||||| || || || | |||| | Sbjct 4701 AATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTTATACAACATATA 4760 Query 48020 AGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTAT 48079 ||| || |||||||| ||| || | |||| ||| | | || || | || Sbjct 4761 TGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAAT--CTTGCGCTAAT 4818 Query 48080 AACAGCTCTAG---CTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC 48136 | ||| | | || ||| || | ||| ||||| |||||| || |||||||| || Sbjct 4819 A-CAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTTCATATAATTTTTCAAATTCTTC 4877 Query 48137 CCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 || | | | ||| || ||||||||||| |||||||| |||| ||||| | || Sbjct 4878 ACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGTCCAATTTTTATT 4937 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGT 48256 | ||| ||||| ||||||| | |||||||| ||||| ||| ||||||||| |||| Sbjct 4938 TTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAGCATAAAATAAATCTCTAGC 4997 Query 48257 TCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATG 48316 || || |||||| || ||| ||| || | | || ||||| || | |||||| | ||| Sbjct 4998 TCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAACTCAAATATATCTGAATG 5057 Query 48317 CCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||||||||| | ||||| ||| | | ||| || ||| || |||||||||| ||| Sbjct 5058 CCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCTTGATCTACATA 5117 Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 ||| || |||| |||| |||||||||||||||| || | || |||||||||||||| || Sbjct 5118 TCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAATCCGTTTGATATACCATTTGT 5177 Query 48437 TC--CCGAAATATAACT----TCCAC-TAGCTCTTATATTACTAATTGAAATACCTATAC 48489 || | | |||| | | ||||| || |||| || | || | ||| |||| Sbjct 5178 TCCTCTTATATATGAATTTTGTCCACGTATATCTTGTACTGCT-------ACACCAATAC 5230 Query 48490 CACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATAC 48549 ||||||| ||||| ||| | |||||| | || | || ||| |||||||||| || Sbjct 5231 CACCTGCAGTTTTACTTATCAAAGCACATTGCTTTAATGTTTCAAAAATTCCTTCAATCG 5290 Query 48550 TATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAAT 48609 ||| || ||||| || || |||||| ||||| || || || ||||||| Sbjct 5291 AATCTGCTTTCATACATAGTAAAAAACATGATGACATCTGTGGTCTTGGTGTCCCTGAAT 5350 Query 48610 TAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAA 48669 ||||||||||||| | |||||| |||| |||| | ||| | || | ||||||||| | Sbjct 5351 TAAATAATGTTGGTGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATATGTTTCTA 5410 Query 48670 TAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAG 48729 | |||| ||| | ||||||||| || ||||| | ||||| || || ||| | Sbjct 5411 ATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATTATCAAATGTTGTG 5470 Query 48730 GTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAAC 48789 ||||||| | |||||| ||||| || ||| | |||||| |||| || |||||||||| Sbjct 5471 GTCTTTCTATAATTTTATTATTAATACGCAATAAATATGACCTTTCTAACGTTTTAAAAC 5530 Query 48790 CAAAATA 48796 ||||||| Sbjct 5531 CAAAATA 5537 >seq1322 Length=3124 Score = 302 bits (334), Expect = 5e-77 Identities = 588/851 (69%), Gaps = 37/851 (4%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||| | ||||||||| || || |||||||| | || || || | Sbjct 2936 TTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAA 2877 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA---TTCTAA 18785 ||||| ||| ||| ||||||||| ||| | | |||||| | ||||| ||| || Sbjct 2876 ATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACCTAAACATTCCAA 2817 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCAC-AATTCATTCCT 18843 || | | ||| |||||||||| ||||| || | ||| | ||| ||||||| || Sbjct 2816 TAATCG---ATCTGCTACAAATTCTATATACTGAGA-CATTA-ATCTTGAATTCATCCCA 2762 Query 18844 ATTAATTTAACAGGTAGTG-----CATCTGTAAGAAATTCTTGTTCTATATTTACTGCCT 18898 ||||| | | |||||| | ||| || |||| |||| || | | || || | Sbjct 2761 ATTAAATCACAAGGTAGAGATTCACATATGAAAGA---TCTT--TCAACTTCAACAGCTT 2707 Query 18899 CTGATATAATAGAT---ACAACTCTATCT--TCATTAGGAGGGTATAGAAGATGTTTAAA 18953 || | |||| | |||||| ||| | ||| | | || | | || | Sbjct 2706 CTTTAACAATATTTTTAACAACTTCTTCTGGTAATTT--ATTTTCTAATAAAC---TATA 2652 Query 18954 CATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAA 19013 || ||||| |||||| ||||| ||| || |||||||| || | ||||||| ||| Sbjct 2651 TATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTACTAAA 2592 Query 19014 TGTTAAACCAGGCATCAGTCCTCttttttttAA-CCAGAATATAGAAGCAAATGATCCAG 19072 || | ||| | | | ||| |||||||| ||| || || | | ||| ||| Sbjct 2591 AGTAAGTCCATGTAATT-TATTCTGTTTTTTAAACCAAAAAATTGCACAAAAACTACCAC 2533 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 ||| | ||||||||| || |||| || || | ||||||| || | | || Sbjct 2532 TAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAAT---GAATTTG 2476 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 ||| || |||||||| |||||| || || || || || ||| || | || | Sbjct 2475 TATCATTTATCCATTTTGCAGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAA 2416 Query 19193 TAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 ||| || ||||| || | ||| || | |||||| | ||| ||| || | ||||| Sbjct 2415 TAGCATGAAATAAATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATAAGTAAAC 2356 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 ||||| |||||||||| || ||||||| || || |||||| |||||| | | |||| Sbjct 2355 TGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTTTTAGCTT 2296 Query 19313 CTGTTATCTGTACTTCACTACAAAATCTTTCGA-CCAAATTTTCATTAACTATTCCATCA 19371 |||| || || ||||| || |||| ||| | | |||||||||| ||||| |||||| Sbjct 2295 CTGTAATTTGAACTTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATACCATCA 2237 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA 19431 |||||||||||||||||||| ||||||||||||||||||||||||| | ||||| | Sbjct 2236 CTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCATTTTCATTTAATTTT 2177 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 | |||| || | ||| | |||||||||| ||||||| |||||||||| || || ||| Sbjct 2176 TCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCT 2117 Query 19492 GCTTTTTTATA 19502 ||||||||||| Sbjct 2116 GCTTTTTTATA 2106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562080518901000