Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1322 266 4e-66 >seq1322 Length=3124 Score = 266 bits (294), Expect = 4e-66 Identities = 572/838 (68%), Gaps = 29/838 (3%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || ||| ||||| || |||| ||| |||| ||||| ||||| ||||||| Sbjct 2948 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 2889 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGT---ACTACA 36988 ||| || || ||||| ||| ||| ||||| || || | | || | || || Sbjct 2888 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCATAAAAAATTTTTGAACAACC 2829 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | | ||||| | || | ||| || ||||||||||| || | | |||||| | | Sbjct 2828 TAAACATTCCA--ATAATCG-ATCTGCTACAAATTCTATATACTGAGACATTAATCTTGA 2772 Query 37049 GTTTATACCAATTAGTTTTAC----TGGAATTGCATCTTGAAGAAATAGTTTTTCTATTA 37104 || || ||||||| | || | || | || | | |||| | | |||| | | Sbjct 2771 ATTCATCCCAATTAAATC-ACAAGGTAGAGATTCACAT--ATGAAAGA-TCTTTCAACTT 2716 Query 37105 TTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATT 37164 ||||| |||||||| ||||| || ||||||||| | | || || ||| | Sbjct 2715 CAACAGCTTCTTTAACAATATTTTTAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC 2656 Query 37165 TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAG 37224 || | | |||||| |||||| |||||| |||||||||||||| || | ||||||| Sbjct 2655 TATATATTAAACAATTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTAC 2596 Query 37225 AAAAGGTTAATCC-TGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 ||| || | ||| || ||| | || |||||| || |||||| ||||| |||| Sbjct 2595 TAAAAGTAAGTCCATGTAATTTATTCTGTTTTTTAAA-CCAAAAAATTGCACAAAAACTA 2537 Query 37284 CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA 37343 ||| ||| | ||||||||||| |||| |||||||| | | | || |||| Sbjct 2536 CCACTAAATAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA---TGAA 2480 Query 37344 CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAAT-TTAACACATTCAATTGT 37402 | |||| ||||||||| | |||| ||| |||| | ||||| | || | Sbjct 2479 TTTGTATCATTTATCCATTTTGCAGCCCAAAGTGC-TTTATTCTTAACTGCTGGTATATT 2421 Query 37403 TTCAATTGCTTTTAAGAGAAAGttttt--ttCTTCACTATCTGTTATATAAGTATCAATT 37460 |||||| || | || | || || ||||| | |||| |||||||| ||||||| Sbjct 2420 TTCAATAGCATGAAATA--AATTTAAACGTTCTTTATCATCTTTTATATAATTATCAATA 2363 Query 37461 AGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACAC 37520 |||||||| ||| |||| || || || ||||| | ||||| ||||| ||||| Sbjct 2362 AGTAAACTGTACGTTTCTGAATGTATGTTTTCTACTGCTATTTGAAATGAGTAAAATTTT 2303 Query 37521 CTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATC 37580 ||||||| | | |||||| || | |||||| | |||| || ||||| ||||| Sbjct 2302 TTAGCTTCTGTAATTTGAACTTCTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATA 2243 Query 37581 CCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGA- 37639 ||||||||||||||||| || || | ||||| ||| ||||||||| |||||| ||| | Sbjct 2242 CCATCACTAGCTGCAAAAAATGCTAAAACATGTTTAATAAAATGTTTTTCAT--TTTCAT 2185 Query 37640 -TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 |||||||| |||| || | ||| |||||||||| | ||| ||| | |||||||| Sbjct 2184 TTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAA 2127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592286999061000