Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2752 143 2e-29 >seq2752 Length=4442 Score = 143 bits (158), Expect = 2e-29 Identities = 415/629 (66%), Gaps = 11/629 (2%) Strand=Plus/Minus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 |||| || ||||| || || ||| ||||| || | | || || || | | || Sbjct 3890 TGGGGAACGGTCTCGGTTCTCTCCGCAGCTGCTCTTTTAAAGCCTCGACATGGTTCGTGT 3831 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 |||| || | || |||| | ||| | ||||| |||| ||| | |||||| | Sbjct 3830 AGACATGCGTGTTCCCCATGAAGTGAATGAACTCCTTAGGTTTTAGGTTGCAGACGTGTG 3771 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | | |||| ||| | || || ||| |||||||| ||||| || ||||| || | | Sbjct 3770 CAACCATGAGCGTCAAAAGCGAATAGGAAGCGATGTTGAAGGGGACGCCGAGGCCGACAT 3711 Query 29945 CCCCCGACCTCTGGTAGA-GCTGACACGAGAGCTC--TCCG-TCGCTCACGTAAAACTGA 30000 | | ||||| ||| || | | || ||||| ||||| || | ||| ||||||| ||||| Sbjct 3710 CGCACGACCGCTGATACATGATG-CACGACAGCTCCTTCTGGTCGTTCACGTAGAACTGG 3652 Query 30001 CACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30060 |||| ||| || || || || ||||| | ||| || || |||||||| | Sbjct 3651 CACAACAAGTGACAAGGCGGCAGCGCCATTTCGTCCAGCGCTGCAGGATTCCAGGCAGTC 3592 Query 30061 ACGATGATGCGCCTGTCTTCTGGGTT-GTTC-CTG-ATGAGGTCCACGGCGTTTTGCAGC 30117 | || ||||| | ||| ||| || |||| | | || || ||| || | |||| Sbjct 3591 ATGAGCATGCGACGATCTGTTGGATTCGTTCTCAGCATCTGGATCACA---TTCTTCAGC 3535 Query 30118 TGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGC 30177 || || || ||| ||| | |||||||| |||||| |||| | || ||||| || Sbjct 3534 TGGTCGACGCCCTGCCCTGTGTAGTCTGTGTGCATGTCTTTGTATGCCGCGCCGAAGTGT 3475 Query 30178 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC 30237 ||||||||||| ||||| |||| || | |||||| | || | ||| || | | Sbjct 3474 CTCCACTGGAAGCCGTAGCCCGGGCCGATGTCTCCGACCTCTCGGTGGGGGAGATTGCGC 3415 Query 30238 TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGC 30297 || | || || | | | || |||||||||||| || |||||||| || || Sbjct 3414 GAATCGAGGAACTCGCGTGTCACATTCTTGTCCCAGATCTTCACGCCCTTCTCAGAAAGA 3355 Query 30298 TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA 30357 | || | ||| ||| || | | ||||||||||| ||| || | ||| | ||||| Sbjct 3354 TGGTTTGCGTTCGTGTCGCCGCGAATGAACCACAGCAACTCTTCGAGGACCCCTTTCCAG 3295 Query 30358 AAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 || || | ||| || ||||| || ||||| Sbjct 3294 AACACACGCTTTGTGGTGAGAAGTGGAAA 3266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408597555391325