Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq698 178 1e-39 seq147 104 2e-17 >seq698 Length=7480 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||||||||| ||||| |||||||| | ||||||||||| || || || ||||| | Sbjct 5864 TCCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGA 5923 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | ||||| |||| ||||||||||| ||||||||||| || | || |||||||| || Sbjct 5924 TAATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGG 5983 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 || ||||| |||||||||||||| |||||| | || | || || || | ||| || Sbjct 5984 TATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAAC 6043 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || || || || ||||| |||||||||||||| Sbjct 6044 ATCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 6091 Score = 172 bits (190), Expect = 4e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||||||||| ||||| ||||| || | ||||||||||| ||||| || ||||| | Sbjct 5633 TCCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGTATGTTATAATCTGA 5692 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | ||||| |||| ||||||||||| ||||||||||| || | || ||||| || || Sbjct 5693 TAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCTGGTGG 5752 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||| ||||| |||||||||||||| || ||| | || | || || || | ||| || Sbjct 5753 AATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTCTCAATGGTATCCGATGATTCAAC 5812 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || || || || ||||| |||||||||||||| Sbjct 5813 ATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 5860 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| ||||| ||||| || | ||||||||||| || || || ||||| | Sbjct 5403 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 5462 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| ||||||||||| ||||||||||| || | || |||||||| || Sbjct 5463 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 5522 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||||||||| |||||| | || | || || || | ||| || Sbjct 5523 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACA 5582 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || || || || ||||| |||||||||||||| Sbjct 5583 TCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 5629 Score = 149 bits (164), Expect = 5e-31 Identities = 156/203 (77%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||||||||| ||||| |||||||| | ||||||||| ||||| || || ||||| | Sbjct 6095 TCCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATC--C 6152 Query 101302 GATA--GTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 ||| ||||| |||| ||||||||||| ||||||||||| || | || |||||||| Sbjct 6153 AATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGT 6212 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || || ||||| |||||||||||||| |||||| | || | || || || | || Sbjct 6213 GGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGACTCA 6272 Query 101420 ACTTCAAGAGTGACCGTTTTGCC 101442 || || | |||| |||||| || Sbjct 6273 ACATCCAAGGTGATCGTTTTTCC 6295 >seq147 Length=23875 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 101270 AGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTA 101329 || || |||||||| || ||||| ||||| | |||| | || || ||||| || Sbjct 23204 AGAGTGGATTCTTTCTGGATATTATAATCATTTAAAGTTTTTCCACATTCTAATTGTTTT 23263 Query 101330 CCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 101389 |||||||| || || | |||| ||| | ||||| |||| ||||| ||||||||| | Sbjct 23264 CCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCT 23323 Query 101390 TTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAA 101449 || | | |||| | ||| || | ||| || ||||| | | ||||| || |||| Sbjct 23324 TTAATATTTTCAATAGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAAT 23383 Query 101450 GTTTTTACAAATATCTGCAT 101469 |||||||||||||| ||||| Sbjct 23384 GTTTTTACAAATATTTGCAT 23403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396258960686925