Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq141 86.0 1e-11 >seq141 Length=19222 Score = 86.0 bits (94), Expect = 1e-11 Identities = 293/449 (65%), Gaps = 11/449 (2%) Strand=Plus/Plus Query 150291 TAACTGATCTTGCAGCAGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT- 150349 |||||| | | ||| || |||||| | || ||| | |||||| | || | ||| || Sbjct 3629 TAACTGCTTTAGCAAGAGCTGGTAAATTAGACCCAGTTATTGGTAGAGATAACGAAATTA 3688 Query 150350 GATGATCTAATTCAGATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAA 150409 || || ||| | |||||||| || | | ||| ||||| || | || | || || Sbjct 3689 GAAGAGCTA-TACAGATTCTATCGAGGAGAACGAAAAATAACCCTATTTTGTTAGGAGAT 3747 Query 150410 CCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGAT 150469 || || ||||||||||| || ||||| || ||||| || | | || ||| Sbjct 3748 CCTGGAGTTGGTAAAACTGCTATTGTTGAAGGTTTAGCCATTAAAATTGTACAAGGAGAT 3807 Query 150470 GTTCCAGATTCTATGAAAGATGTTGAAATTC--TTTCTTTGAATATGGGTGCATTTACTG 150527 || || || ||| | |||| | |||| | |||| || ||||| | || | | || Sbjct 3808 GTACCTGACTCTTTAAAAG--GAAGAAAATTAGTTTCATTAGATATGTCTTCACTAATTG 3865 Query 150528 CTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAA 150587 | ||| | || ||| | || || || || || | || | | | | ||| ||||| || Sbjct 3866 CCGGTGCGAAATATAGAGGAGATTTTGAGGAGAGATTAAAAAGTATACTAAAAGAAGTAC 3925 Query 150588 AAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTG 150644 |||| || | | ||| || |||| || |||||||| ||||| || | ||||||| Sbjct 3926 AAGATGCTGAAGGACAAGTTGTTATGTTTATAGATGAAATTCATACAGTTGTAGGTGCTG 3985 Query 150645 GTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCG 150704 |||| || | ||| || | ||| | ||||| ||||||||| || || | | Sbjct 3986 GTGCTGTTGCTGAAGGTGCTCTTGATGCTGGTAATATTTTAAAACCTATGTTAGCTAGAG 4045 Query 150705 GTGAAATTCG-TGTCATCGGTGCAACAAC 150732 | ||| || | ||| || ||||| || || Sbjct 4046 GAGAACTTAGATGT-ATTGGTGCTACTAC 4073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147531218404450