Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq698 159 6e-34 seq147 131 3e-25 >seq698 Length=7480 Score = 159 bits (176), Expect = 6e-34 Identities = 178/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 || ||| | ||| ||||| ||||| | || | || || |||| ||||| || || Sbjct 5393 AAATTAAAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTT 5452 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || ||||| ||||| ||| || ||||| ||||| ||||| |||||||| || || Sbjct 5453 ATAATCTGATAATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTG 5512 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || ||||||||||| |||||||| ||||| | |||| ||| ||| ||||| || Sbjct 5513 ATCGGGTGGTATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGA 5572 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || || || || || ||||| | ||||| |||||||| |||||| Sbjct 5573 TGATTCAACATCGAGGGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 5630 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| ||||| | || | ||| || |||| ||||| || ||||| || ||| Sbjct 5865 CCTCCTCTTAATCGTAAGACTAAATGTAAAGTAGATTCTTTCTGGATGTTATAATCTGAT 5924 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || ||||| ||| || ||||| ||||| ||||| |||||||| || ||||| || ||| Sbjct 5925 AATGTTCTTCCATCCTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 5984 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| |||||||| ||||| | |||| ||| ||| ||||| || || ||||| Sbjct 5985 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGATTCAACA 6044 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || ||||| | ||||| |||||||| |||||| Sbjct 6045 TCGAGCGTGATGGTCTTTCCTGTCAAGGTTTTCACAAATATCTGCATT 6092 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| ||||| | || | ||| || |||| || || || ||||| || || Sbjct 6096 CCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAAT 6155 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || ||||| ||| || ||||| ||||| ||||| |||||||| || ||||| || ||| Sbjct 6156 AATGTTCTTCCATCTTCCAATTGCTTTCCTGCAAATATTAATCTTTGCTGATCGGGTGGT 6215 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| |||||||| ||||| | |||| ||| ||| ||||| || |||||||| Sbjct 6216 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTATCCGATGACTCAACA 6275 Query 193314 TCTAGAGTTATAGTTTTACCT 193334 || | || || ||||| ||| Sbjct 6276 TCCAAGGTGATCGTTTTTCCT 6296 >seq147 Length=23875 Score = 131 bits (144), Expect = 3e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 |||||||||||||| |||||||||||||| |||| || | || ||| |||| ||||| Sbjct 23252 TCTAATTGTTTTCCTGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCC 23311 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||| | ||| |||||| ||||||||| || ||||| || || | || ||| Sbjct 23312 TGAATTTTTGCTTTAATATTTTCAATAGTATCTACTGATTCAACCTCAAGGGCAATTGTT 23371 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||| ||||||||||||||||||||||| Sbjct 23372 TTTCCCCTTAATGTTTTTACAAATATTTGCATTTT 23406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899609136138000