Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1322 264 2e-65 seq698 136 6e-27 seq147 86.0 9e-12 >seq1322 Length=3124 Score = 264 bits (292), Expect = 2e-65 Identities = 564/825 (68%), Gaps = 24/825 (3%) Strand=Plus/Minus Query 17884 TTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATT 17943 ||| || || || ||||| ||||||| | || ||||||| ||| ||| ||| ||||| Sbjct 2915 TTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATT 2856 Query 17944 AGTGGTTTTATAATATTTTTCTTGTAT-TAATTCGTATAATAATCTATCTGCTACAAATT 18002 | | | | || |||||| | ||| | ||||||| |||||||||||||| Sbjct 2855 TTTTGCATAAAAA-ATTTTTGAACAACCTAAACATTCCAATAATCGATCTGCTACAAATT 2797 Query 18003 CGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCA- 18061 | | ||| || ||||| || ||||||| || | || ||||||||| ||| Sbjct 2796 CTATATACTGAGACATTAATCTTGAATTCATCCCAATTAAATCACAAGGTAGAGATTCAC 2737 Query 18062 ATAATAAAT-TCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTT 18120 ||| ||| |||||| | ||||||| ||||| | || ||| | || || Sbjct 2736 ATATGAAAGATCTTTCA--ACTTCAACAGCTTCTTTAACAATATTTTTAACAACTTCTTC 2679 Query 18121 TGGCAATTTATTAATTATGTGATTATA--ATATAATAAACACGCAAAATCAGTGTGTAAA 18178 ||| |||||||| || | | || | ||||| |||||| |||||| || ||||| Sbjct 2678 TGGTAATTTATT--TTCT---AATAAACTATATATTAAACAATTAAAATCTGTATGTAAT 2624 Query 18179 CCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttt 18238 ||||||||||| |||| ||| |||||||| || | || | | | || ||| ||| Sbjct 2623 CCTTCATCTCTACTAATTAGTTCATTACTAAAAGTAAGTCCATGTAATTTAT-TCTGTTT 2565 Query 18239 tttAG-CCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAA 18297 |||| |||||| || | ||||||| | ||| | |||||| ||||| || || Sbjct 2564 TTTAAACCAAAAAATTGCACAAAAACTACCACTAAATAGTATACCTTCAACACATGCATT 2505 Query 18298 CGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT-ATCCATTTTTGTGCCCATT 18356 |||| | |||||| ||||| || |||| | ||| | ||||||||| ||||| Sbjct 2504 TGCTACAATTCTTTCTGCAAA--TGAATTTGTA--TCATTTATCCATTTTGCAGCCCAAA 2449 Query 18357 CTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTT 18416 | ||| | |||||| | || ||||||| ||| |||| ||||| Sbjct 2448 GTGCTTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTTCTT 2389 Query 18417 TGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCA 18476 | ||||||||||||| | || || | ||| ||| |||| ||||||||| |||| | Sbjct 2388 TATCATCTTTTATATAATTATCAATAAGTAAACTGTACGTTTCTGAATGTATGTTTTCTA 2329 Query 18477 TAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATC 18536 ||||| ||||| ||||| | |||| || | | ||||| || || ||||| | Sbjct 2328 CTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACTTCTCT-TAAAAAC 2270 Query 18537 TTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATAT 18595 || ||| ||||||| || |||||||| ||| || ||| |||||||| ||||||| | Sbjct 2269 TTACTAGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAAAACATGT 2210 Query 18596 TTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC-CATTCATCTATATCTTTTGATAG 18654 ||||| |||||||||||||| || || | ||| ||| | || | || ||| |||||| Sbjct 2209 TTAATAAAATGTTTTTCATTTTCATTTA-ATTTTTCAAAATCTTTTAAATCACTTGATAA 2151 Query 18655 ATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTA 18699 ||| | |||||| | ||||||||| |||| ||| || | ||| || Sbjct 2150 ATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 2106 >seq698 Length=7480 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | ||||| ||||| ||||| || || || | || || ||| || Sbjct 5861 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 5802 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || ||||| |||||||| ||||| || || ||||| || Sbjct 5801 GGATACCATTGAGAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 5742 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||| || | ||| || ||||| | |||||| ||||| |||||||||||||| Sbjct 5741 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 5682 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| ||||| | || | || ||||| ||| |||||||||| || Sbjct 5681 CATACAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 5634 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | ||||| ||||| ||||| || || || | || || ||| || Sbjct 5630 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACCCTCGATGTTGAATCATC 5571 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || ||||| |||||||| ||||| ||||| || || || Sbjct 5570 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 5511 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||| || | ||| || ||||| | |||||| ||||| |||||||||||||| Sbjct 5510 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAAGATGGAAGAACATTATCAGATTATAA 5451 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAATT 156058 || ||||| | || | || ||||| ||| |||||||||| ||| | |||| Sbjct 5450 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGTTTTTAATT 5394 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | ||||| ||||| ||||| || || || | || || ||| || Sbjct 6092 AATGCAGATATTTGTGAAAACCTTGACAGGAAAGACCATCACGCTCGATGTTGAATCATC 6033 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || ||||| |||||||| ||||| ||||| || || || Sbjct 6032 GGATACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATACCACCCGATCA 5973 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||| || | ||| || ||||| | || ||| ||||| |||||||||||||| Sbjct 5972 GCAAAGATTAATATTTGCAGGAAAGCAATTGGAGGATGGAAGAACATTATCAGATTATAA 5913 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || | |||||||| ||| |||||||||| || Sbjct 5912 CATCCAGAAAGAATCTACTTTACATTTAGTCTTACGATTAAGAGGAGG 5865 >seq147 Length=23875 Score = 86.0 bits (94), Expect = 9e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||||||| | |||||||| | |||||||| ||| | | || || ||| Sbjct 23406 AAAATGCAAATATTTGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATCA 23347 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 |||| |||| ||| | ||| ||||| || ||||| |||| || || | || Sbjct 23346 GTAGATACTATTGAAAATATTAAAGCAAAAATTCAGGATAAGGAAGTAATTCCCCTCGAC 23287 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||| |||| ||| || || || | ||| | | ||||||| |||||| Sbjct 23286 GAACAAAGATTAATTTTTGCAGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATTAT 23227 Query 156000 AATAT 156004 ||||| Sbjct 23226 AATAT 23222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731835177690000